Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3 6 6 C 1.40889 * 126.28905 * 80.02498 * 5 2 1 7 7 C 1.34851 * 107.41484 * 179.97438 * 6 5 2 8 8 N 1.36346 * 108.22137 * 359.97438 * 7 6 5 9 9 C 1.46499 * 125.63777 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46707 * 90.02559 * 9 8 7 11 11 C 1.53003 * 109.46726 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47042 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00249 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46953 * 60.00667 * 16 14 12 18 18 H 1.48501 * 109.47216 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47425 * 300.00406 * 16 14 12 20 20 C 1.34852 * 126.29051 * 259.71186 * 5 2 1 21 21 H 1.08999 * 109.47836 * 59.99714 * 1 2 3 22 22 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47018 * 299.99687 * 1 2 3 24 24 H 1.00896 * 111.00309 * 296.04346 * 4 2 1 25 25 H 1.00902 * 110.99923 * 60.00509 * 4 2 1 26 26 H 1.08001 * 126.29629 * 359.97438 * 6 5 2 27 27 H 1.08002 * 125.89057 * 179.97438 * 7 6 5 28 28 H 1.08996 * 109.46785 * 210.02450 * 9 8 7 29 29 H 1.09000 * 109.46945 * 330.02857 * 9 8 7 30 30 H 1.08996 * 109.47409 * 299.99508 * 10 9 8 31 31 H 1.09000 * 109.47174 * 60.00438 * 10 9 8 32 32 H 1.09001 * 109.47599 * 299.99953 * 11 10 9 33 33 H 1.09002 * 109.47160 * 59.99975 * 11 10 9 34 34 H 0.96997 * 120.00318 * 179.97438 * 15 14 12 35 35 H 1.07999 * 125.88898 * 0.02562 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 2.1249 -2.1049 1.4088 7 6 2.6220 -2.3218 2.6434 8 7 2.8404 -1.1123 3.2336 9 6 3.3759 -0.9043 4.5812 10 6 4.9017 -0.8119 4.5149 11 6 5.4610 -0.5941 5.9223 12 6 6.9639 -0.5037 5.8572 13 1 7.4695 -0.5922 4.9069 14 6 7.6933 -0.3068 7.0105 15 7 7.0776 -0.1985 8.1675 16 14 9.5562 -0.1940 6.9296 17 1 9.9458 0.9450 6.0600 18 1 10.0990 0.0185 8.2954 19 1 10.1046 -1.4550 6.3691 20 6 2.4814 -0.1282 2.3608 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7502 -1.6648 -1.1910 25 1 1.6961 -0.2349 -2.0386 26 1 1.8484 -2.8612 0.6890 27 1 2.8141 -3.2871 3.0880 28 1 2.9734 0.0210 4.9933 29 1 3.0899 -1.7408 5.2189 30 1 5.3042 -1.7372 4.1028 31 1 5.1877 0.0246 3.8773 32 1 5.0585 0.3314 6.3341 33 1 5.1750 -1.4303 6.5604 34 1 7.5908 -0.0603 8.9790 35 1 2.5440 0.9343 2.5439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085836742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = 25.302125 kcal Electronic energy + Delta-G solvation = -14490.486866 eV Core-core repulsion = 12102.356461 eV Total energy + Delta-G solvation = -2388.130405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91227 -36.22884 -34.49843 -32.49267 -30.10536 -29.14157 -27.96867 -26.40981 -23.51077 -22.32029 -20.55421 -19.76650 -19.00571 -17.05193 -16.22881 -15.48508 -14.63819 -14.47891 -14.28794 -14.00472 -13.39278 -13.25543 -13.03521 -12.63661 -12.25787 -12.05700 -11.85530 -11.65974 -11.32220 -10.90355 -10.85035 -10.79268 -10.62874 -9.86702 -9.57117 -9.23242 -8.73302 -8.41173 -8.08552 -7.75685 -6.06225 -4.09127 2.63306 3.23739 3.31127 3.35188 3.36566 3.40321 4.42119 4.72294 4.98534 5.24086 5.25474 5.30102 5.31096 5.38966 5.52638 5.66628 5.74900 5.82221 5.88341 5.92658 6.06791 6.36634 6.49286 6.63168 6.71256 6.92524 7.17114 7.30601 7.47704 7.55549 7.59145 7.68133 7.76167 7.91846 8.34124 8.96915 9.55607 11.05028 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.004500 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.951409 B = 6221.183752 C = 6404.795201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.163 3.837 3 H 0.078 0.922 4 N -0.840 5.840 5 C -0.168 4.168 6 C -0.197 4.197 7 C -0.013 4.013 8 N -0.435 5.435 9 C 0.100 3.900 10 C -0.123 4.123 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.006 4.006 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.339 0.661 25 H 0.335 0.665 26 H 0.125 0.875 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 -1.152 -12.931 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 H 0.096 0.904 4 N -0.368 5.368 5 C -0.175 4.175 6 C -0.222 4.222 7 C -0.144 4.144 8 N -0.108 5.108 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.138 4.138 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.173 0.827 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.646 -0.884 -12.096 16.815 hybrid contribution 0.057 -0.126 -0.071 0.155 sum -11.588 -1.009 -12.167 16.833 Atomic orbital electron populations 1.22599 0.97858 1.01808 1.01528 1.19584 0.90996 0.96831 0.87438 0.90397 1.58842 1.67598 1.06756 1.03636 1.19096 1.09497 0.93720 0.95217 1.20467 1.09776 0.95156 0.96770 1.21764 1.07954 0.89419 0.95306 1.44360 1.47305 1.05720 1.13457 1.22217 0.96978 1.03084 0.79776 1.22038 0.90511 1.01513 1.02036 1.19053 0.95813 0.97209 0.89278 1.21161 0.91735 1.49794 0.93417 0.92659 1.25013 0.98712 0.95175 0.95439 1.69942 1.35729 1.49667 0.98160 0.86625 0.85438 0.78719 0.77063 1.20167 1.21218 1.20166 1.21506 1.07133 0.93976 0.91162 0.93268 0.92782 0.92162 0.84808 0.85339 0.85695 0.82693 0.89764 0.89733 0.92627 0.92615 0.96373 0.96380 0.92846 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.46 37.15 0.35 -1.38 16 2 C 0.16 1.89 3.82 -68.86 -0.26 1.63 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 4 N -0.84 -9.01 9.19 -5.65 -0.05 -9.06 16 5 C -0.17 -2.39 5.12 -104.82 -0.54 -2.93 16 6 C -0.20 -2.81 10.20 -39.78 -0.41 -3.21 16 7 C -0.01 -0.20 11.43 -16.75 -0.19 -0.39 16 8 N -0.44 -6.93 2.75 -117.13 -0.32 -7.25 16 9 C 0.10 1.65 6.09 -4.04 -0.02 1.63 16 10 C -0.12 -2.49 5.48 -26.73 -0.15 -2.64 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.01 -0.09 11.35 -16.75 -0.19 -0.28 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.34 3.38 8.09 -39.29 -0.32 3.07 16 25 H 0.33 2.82 9.04 -39.29 -0.36 2.46 16 26 H 0.13 1.54 7.65 -52.49 -0.40 1.14 16 27 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -30.51 296.92 -7.83 -38.34 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.69 Total: 3.37 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.96 Total: -20.61 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.36 Total: -42.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.51 -7.83 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085836742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.638 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds