Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47264 * 2 1 4 4 N 1.46891 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.46907 * 110.99732 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47135 * 35.00113 * 5 4 3 7 7 C 1.52998 * 109.47220 * 274.99823 * 5 4 3 8 8 C 1.50701 * 109.47260 * 154.99642 * 5 4 3 9 9 C 1.41176 * 126.24305 * 39.69480 * 8 5 4 10 10 C 1.34804 * 107.50711 * 179.82659 * 9 8 5 11 11 N 1.36847 * 108.18232 * 0.43062 * 10 9 8 12 12 C 1.37501 * 125.69117 * 179.70276 * 11 10 9 13 13 H 1.08003 * 119.99810 * 199.23814 * 12 11 10 14 14 C 1.38923 * 120.00129 * 19.23833 * 12 11 10 15 15 N 1.31358 * 119.99532 * 10.45754 * 14 12 11 16 16 Si 1.86795 * 120.00072 * 190.45720 * 14 12 11 17 17 H 1.48496 * 109.47056 * 59.99991 * 16 14 12 18 18 H 1.48503 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46983 * 300.00069 * 16 14 12 20 20 C 1.34800 * 126.24753 * 219.99799 * 8 5 4 21 21 H 1.08997 * 109.46975 * 59.99367 * 1 2 3 22 22 H 1.09001 * 109.46768 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46772 * 299.99858 * 1 2 3 24 24 H 1.09007 * 109.46909 * 240.00546 * 2 1 3 25 25 H 1.08990 * 109.47357 * 120.00680 * 2 1 3 26 26 H 1.08999 * 109.46272 * 59.99985 * 3 2 1 27 27 H 1.09002 * 109.46951 * 300.00205 * 3 2 1 28 28 H 1.00896 * 111.00634 * 56.04917 * 4 3 2 29 29 H 1.09008 * 109.46899 * 59.99632 * 7 5 4 30 30 H 1.08995 * 109.47199 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.47303 * 300.00187 * 7 5 4 32 32 H 1.08003 * 126.24830 * 359.97438 * 9 8 5 33 33 H 1.07995 * 125.90958 * 180.17442 * 10 9 8 34 34 H 0.97001 * 119.99533 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.90747 * 0.02562 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8139 0.0000 6 1 3.3801 3.4544 0.5901 7 6 4.1004 3.3359 -1.4367 8 6 5.4179 2.8210 0.5999 9 6 6.4214 1.8492 0.3959 10 6 7.5033 2.2283 1.1050 11 7 7.2029 3.3972 1.7501 12 6 8.0488 4.0967 2.5782 13 1 7.6479 4.8173 3.2757 14 6 9.4192 3.8767 2.5178 15 7 9.9269 3.1611 1.5401 16 14 10.5397 4.5982 3.8266 17 1 10.1498 4.0694 5.1583 18 1 11.9465 4.2216 3.5363 19 1 10.4135 6.0779 3.8253 20 6 5.9201 3.7535 1.4338 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.8703 0.9165 -0.7822 29 1 3.1004 3.3307 -1.8707 30 1 4.4906 4.3536 -1.4362 31 1 4.7558 2.6954 -2.0268 32 1 6.3383 0.9647 -0.2183 33 1 8.4430 1.6988 1.1584 34 1 10.8837 3.0078 1.4977 35 1 5.3998 4.6300 1.7909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085838206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 14.470551 kcal Electronic energy + Delta-G solvation = -14844.929383 eV Core-core repulsion = 12456.329286 eV Total energy + Delta-G solvation = -2388.600097 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44471 -38.17000 -35.50281 -34.38893 -31.74613 -30.37485 -28.65217 -26.79786 -25.75362 -22.99708 -22.27235 -21.42075 -19.90525 -19.05915 -17.35887 -16.66069 -16.19058 -15.79647 -15.37322 -14.79345 -14.46552 -14.35454 -14.12131 -13.52978 -13.45414 -13.31024 -13.00079 -12.86373 -12.74923 -12.60902 -12.47244 -12.20576 -12.09044 -11.71636 -11.58414 -11.44715 -11.04662 -9.34598 -9.10223 -8.59958 -8.33769 -6.29754 1.33641 1.37790 1.50675 2.01451 2.17784 2.55108 3.08213 3.36121 3.56791 4.12367 4.26036 4.29297 4.50788 4.54407 4.60166 4.72003 4.74597 4.86944 4.93918 4.99203 5.07199 5.12840 5.18216 5.23938 5.33995 5.38138 5.42111 5.48547 5.76538 5.93088 6.07869 6.42778 6.66082 6.68190 6.85410 7.34940 7.76402 8.47476 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.059237 B = 0.005228 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.568064 B = 5354.447942 C = 5407.865459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.060 3.940 4 N -0.690 5.690 5 C 0.174 3.826 6 H 0.069 0.931 7 C -0.161 4.161 8 C -0.175 4.175 9 C -0.238 4.238 10 C -0.038 4.038 11 N -0.277 5.277 12 C -0.386 4.386 13 H 0.108 0.892 14 C -0.001 4.001 15 N -0.879 5.879 16 Si 1.014 2.986 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.259 1.259 20 C -0.104 4.104 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.340 0.660 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.281 0.719 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -2.170 -2.948 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.069 4.069 4 N -0.321 5.321 5 C 0.064 3.936 6 H 0.087 0.913 7 C -0.220 4.220 8 C -0.183 4.183 9 C -0.263 4.263 10 C -0.175 4.175 11 N 0.064 4.936 12 C -0.513 4.513 13 H 0.126 0.874 14 C -0.206 4.206 15 N -0.511 5.511 16 Si 0.834 3.166 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.183 1.183 20 C -0.239 4.239 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.158 0.842 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.134 -2.107 -2.110 11.526 hybrid contribution 0.749 0.540 -0.446 1.025 sum -10.385 -1.567 -2.555 10.809 Atomic orbital electron populations 1.21698 0.94311 1.02260 1.02059 1.21474 0.96498 0.95650 1.02100 1.22048 0.87087 0.97585 1.00162 1.60433 1.07468 1.13766 1.50417 1.19508 0.90795 0.88991 0.94292 0.91326 1.22323 1.01291 1.01443 0.96920 1.19112 0.96374 0.97756 1.05036 1.20366 0.94317 1.02483 1.09113 1.21930 1.00376 0.91095 1.04099 1.40438 1.09287 1.14852 1.29041 1.20326 0.88931 1.24032 1.18053 0.87440 1.26578 0.98710 0.96383 0.98924 1.70052 1.14590 1.36761 1.29742 0.84715 0.76052 0.78892 0.76983 1.18639 1.19568 1.18280 1.21609 0.88599 1.04221 1.09431 0.92211 0.91797 0.92680 0.91875 0.92484 0.92031 0.94697 0.84175 0.91394 0.93079 0.93186 0.86235 0.84300 0.90876 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.52 6.19 30.60 0.19 -2.33 16 3 C 0.06 1.49 5.48 86.31 0.47 1.96 16 4 N -0.69 -21.78 6.00 -495.45 -2.97 -24.76 16 5 C 0.17 6.16 3.03 44.17 0.13 6.29 16 6 H 0.07 2.36 7.79 -2.39 -0.02 2.34 16 7 C -0.16 -4.92 9.14 71.98 0.66 -4.26 16 8 C -0.17 -8.05 5.13 -19.93 -0.10 -8.16 16 9 C -0.24 -11.87 10.53 22.20 0.23 -11.63 16 10 C -0.04 -2.12 10.06 83.12 0.84 -1.28 16 11 N -0.28 -15.77 2.91 -350.08 -1.02 -16.78 16 12 C -0.39 -21.67 10.08 83.97 0.85 -20.82 16 13 H 0.11 5.65 7.85 -2.91 -0.02 5.62 16 14 C 0.00 -0.04 5.37 84.93 0.46 0.42 16 15 N -0.88 -49.03 10.82 21.65 0.23 -48.80 16 16 Si 1.01 40.39 29.56 68.60 2.03 42.42 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 C -0.10 -5.28 11.28 83.12 0.94 -4.34 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 27 H 0.03 0.78 7.44 -2.39 -0.02 0.76 16 28 H 0.34 10.18 8.47 -89.70 -0.76 9.42 16 29 H 0.07 1.68 7.45 -2.38 -0.02 1.66 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 33 H 0.14 8.20 6.34 -2.91 -0.02 8.18 16 34 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.14 6.56 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -62.30 291.61 3.94 -58.36 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.29 Total: 35.41 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 5.38 Total: -45.84 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -3.76 Total: -90.34 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -62.30 3.94 -58.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085838206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -62.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds