Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09007 * 109.46923 * 55.00182 * 3 2 1 5 5 N 1.46894 * 109.47392 * 295.00134 * 3 2 1 6 6 C 1.50703 * 109.47491 * 174.99955 * 3 2 1 7 7 C 1.40884 * 126.29055 * 79.99885 * 6 3 2 8 8 C 1.34851 * 107.41937 * 179.73703 * 7 6 3 9 9 N 1.36345 * 108.21376 * 0.42914 * 8 7 6 10 10 C 1.46498 * 125.63206 * 179.82754 * 9 8 7 11 11 C 1.53001 * 109.47428 * 269.69405 * 10 9 8 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.34848 * 126.29215 * 260.00449 * 6 3 2 21 21 H 1.08997 * 109.46976 * 59.99252 * 1 2 3 22 22 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46900 * 300.00012 * 1 2 3 24 24 H 1.09000 * 109.47351 * 240.00140 * 2 1 3 25 25 H 1.09001 * 109.47286 * 120.00336 * 2 1 3 26 26 H 1.00899 * 111.00460 * 176.04212 * 5 3 2 27 27 H 1.00900 * 111.00308 * 300.00229 * 5 3 2 28 28 H 1.08009 * 126.29323 * 0.02562 * 7 6 3 29 29 H 1.07997 * 125.89264 * 180.24969 * 8 7 6 30 30 H 1.08998 * 109.47182 * 149.69251 * 10 9 8 31 31 H 1.09006 * 109.47506 * 29.69543 * 10 9 8 32 32 H 1.08998 * 109.47065 * 59.99774 * 11 10 9 33 33 H 1.09001 * 109.46892 * 300.00038 * 11 10 9 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.08001 * 125.89279 * 0.02562 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6515 2.0993 -1.2551 6 6 3.5420 1.4443 0.1238 7 6 4.4647 1.2157 -0.9159 8 6 5.7013 1.3112 -0.3866 9 7 5.5756 1.5810 0.9440 10 6 6.6824 1.7576 1.8873 11 6 7.0455 0.4064 2.5064 12 6 8.1837 0.5882 3.4772 13 1 8.6089 1.5686 3.6334 14 6 8.6857 -0.4980 4.1623 15 7 8.1676 -1.6918 3.9726 16 14 10.1016 -0.2738 5.3599 17 1 9.6983 0.6713 6.4320 18 1 10.4531 -1.5852 5.9618 19 1 11.2795 0.2703 4.6375 20 6 4.2497 1.6650 1.2503 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.9204 3.0718 -1.2528 27 1 2.0422 1.6180 -2.0512 28 1 4.2257 1.0073 -1.9484 29 1 6.6308 1.1916 -0.9233 30 1 6.3821 2.4490 2.6746 31 1 7.5478 2.1603 1.3609 32 1 7.3459 -0.2851 1.7192 33 1 6.1802 0.0037 3.0329 34 1 8.5205 -2.4559 4.4548 35 1 3.8374 1.8720 2.2268 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085839416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = 22.424758 kcal Electronic energy + Delta-G solvation = -14699.842073 eV Core-core repulsion = 12311.586896 eV Total energy + Delta-G solvation = -2388.255177 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74088 -36.40350 -33.95601 -32.04133 -30.89626 -28.72634 -28.55033 -25.30635 -24.14435 -21.49822 -21.18123 -19.48504 -18.88114 -16.93491 -16.02879 -15.78798 -14.72111 -14.42633 -14.07396 -13.83177 -13.30854 -12.99603 -12.77688 -12.56867 -12.24547 -12.22331 -11.55700 -11.38898 -11.15497 -11.03950 -10.83220 -10.70459 -10.56029 -10.19882 -9.88720 -9.41964 -8.64766 -8.52425 -7.90052 -7.60155 -6.16344 -4.22502 2.83389 3.23575 3.28710 3.30161 3.35227 3.65371 4.33659 4.84560 5.16579 5.19568 5.38883 5.44874 5.54053 5.59049 5.63948 5.82163 5.95141 6.03400 6.09566 6.10623 6.19932 6.37489 6.47104 6.51802 6.60264 6.79123 7.31972 7.42064 7.44398 7.47384 7.61949 7.75052 7.82640 7.97075 8.17416 8.83330 9.43028 10.94621 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.046546 B = 0.005139 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.415757 B = 5447.469613 C = 5770.845052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.168 3.832 4 H 0.075 0.925 5 N -0.837 5.837 6 C -0.219 4.219 7 C -0.210 4.210 8 C -0.009 4.009 9 N -0.429 5.429 10 C 0.102 3.898 11 C 0.014 3.986 12 C -0.532 4.532 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.001 4.001 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.337 0.663 27 H 0.336 0.664 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 5.882 -7.761 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.056 3.944 4 H 0.093 0.907 5 N -0.364 5.364 6 C -0.228 4.228 7 C -0.235 4.235 8 C -0.141 4.141 9 N -0.101 5.101 10 C -0.018 4.018 11 C -0.024 4.024 12 C -0.570 4.570 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.134 4.134 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.171 0.829 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.937 5.559 -7.232 13.489 hybrid contribution 2.043 0.054 0.612 2.133 sum -7.894 5.613 -6.621 11.733 Atomic orbital electron populations 1.21690 0.95857 1.00473 1.02055 1.21506 0.95511 0.95695 1.02025 1.19685 0.87659 0.94713 0.92346 0.90695 1.59126 1.66324 1.06703 1.04258 1.20249 0.96032 1.12578 0.93901 1.20452 0.91961 1.12554 0.98489 1.21739 0.99120 1.09060 0.84210 1.44579 1.06549 1.50944 1.08023 1.22346 0.86323 1.02391 0.90746 1.19419 0.97215 0.89802 0.95923 1.20989 1.17247 0.94506 1.24296 0.92376 1.25009 0.97066 0.95096 0.96912 1.69964 1.41596 0.99185 1.41968 0.86567 0.82354 0.77441 0.81134 1.20062 1.21094 1.20087 1.21591 0.82849 1.09717 0.99233 0.91865 0.93768 0.93381 0.92336 0.91806 0.85123 0.85175 0.85910 0.82918 0.90521 0.90526 0.95927 0.95869 0.92614 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.80 37.16 0.36 -1.25 16 2 C -0.11 -1.42 5.56 -26.73 -0.15 -1.56 16 3 C 0.17 2.21 3.20 -68.87 -0.22 1.99 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 5 N -0.84 -9.57 8.60 -5.65 -0.05 -9.62 16 6 C -0.22 -3.43 5.11 -104.82 -0.54 -3.97 16 7 C -0.21 -3.32 10.24 -39.78 -0.41 -3.73 16 8 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 9 N -0.43 -7.98 2.75 -117.13 -0.32 -8.30 16 10 C 0.10 2.03 6.03 -4.04 -0.02 2.01 16 11 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 12 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.00 -0.01 11.35 -16.75 -0.19 -0.20 16 21 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.34 3.64 9.06 -39.29 -0.36 3.29 16 27 H 0.34 3.69 8.25 -39.29 -0.32 3.36 16 28 H 0.12 1.68 7.73 -52.48 -0.41 1.28 16 29 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -29.00 296.30 -7.78 -36.78 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.68 Total: 6.23 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.91 Total: -19.98 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.37 Total: -43.45 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.00 -7.78 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.209 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds