Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09007 * 109.46923 * 55.00182 * 3 2 1 5 5 N 1.46894 * 109.47392 * 295.00134 * 3 2 1 6 6 C 1.50703 * 109.47491 * 174.99955 * 3 2 1 7 7 C 1.40884 * 126.29055 * 79.99885 * 6 3 2 8 8 C 1.34851 * 107.41937 * 179.73703 * 7 6 3 9 9 N 1.36345 * 108.21376 * 0.42914 * 8 7 6 10 10 C 1.46498 * 125.63206 * 179.82754 * 9 8 7 11 11 C 1.53001 * 109.47428 * 269.69405 * 10 9 8 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.34848 * 126.29215 * 260.00449 * 6 3 2 21 21 H 1.08997 * 109.46976 * 59.99252 * 1 2 3 22 22 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46900 * 300.00012 * 1 2 3 24 24 H 1.09000 * 109.47351 * 240.00140 * 2 1 3 25 25 H 1.09001 * 109.47286 * 120.00336 * 2 1 3 26 26 H 1.00899 * 111.00460 * 176.04212 * 5 3 2 27 27 H 1.00900 * 111.00308 * 300.00229 * 5 3 2 28 28 H 1.08009 * 126.29323 * 0.02562 * 7 6 3 29 29 H 1.07997 * 125.89264 * 180.24969 * 8 7 6 30 30 H 1.08998 * 109.47182 * 149.69251 * 10 9 8 31 31 H 1.09006 * 109.47506 * 29.69543 * 10 9 8 32 32 H 1.08998 * 109.47065 * 59.99774 * 11 10 9 33 33 H 1.09001 * 109.46892 * 300.00038 * 11 10 9 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.08001 * 125.89279 * 0.02562 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6515 2.0993 -1.2551 6 6 3.5420 1.4443 0.1238 7 6 4.4647 1.2157 -0.9159 8 6 5.7013 1.3112 -0.3866 9 7 5.5756 1.5810 0.9440 10 6 6.6824 1.7576 1.8873 11 6 7.0455 0.4064 2.5064 12 6 8.1837 0.5882 3.4772 13 1 8.6089 1.5686 3.6334 14 6 8.6857 -0.4980 4.1623 15 7 8.1676 -1.6918 3.9726 16 14 10.1016 -0.2738 5.3599 17 1 9.6983 0.6713 6.4320 18 1 10.4531 -1.5852 5.9618 19 1 11.2795 0.2703 4.6375 20 6 4.2497 1.6650 1.2503 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.9204 3.0718 -1.2528 27 1 2.0422 1.6180 -2.0512 28 1 4.2257 1.0073 -1.9484 29 1 6.6308 1.1916 -0.9233 30 1 6.3821 2.4490 2.6746 31 1 7.5478 2.1603 1.3609 32 1 7.3459 -0.2851 1.7192 33 1 6.1802 0.0037 3.0329 34 1 8.5205 -2.4559 4.4548 35 1 3.8374 1.8720 2.2268 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085839416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = 5.512858 kcal Electronic energy + Delta-G solvation = -14700.575428 eV Core-core repulsion = 12311.586896 eV Total energy + Delta-G solvation = -2388.988532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.07570 -37.54231 -35.81838 -33.79545 -31.92449 -30.37264 -29.85237 -26.89616 -25.52135 -23.29279 -22.29636 -20.86812 -20.12313 -18.80281 -17.62645 -16.79629 -16.65116 -15.55057 -15.51960 -15.24663 -14.74321 -14.36004 -14.21131 -13.93355 -13.70297 -13.49780 -13.21519 -12.86265 -12.62359 -12.55990 -12.26227 -12.03696 -11.88083 -11.68229 -11.58724 -11.48050 -10.65309 -9.68009 -9.24988 -8.91916 -8.28675 -6.43207 1.38599 1.41826 1.45921 1.50535 2.08455 2.20820 2.40593 3.05544 3.85458 3.96512 4.16650 4.24714 4.30208 4.40380 4.43958 4.48415 4.67194 4.67651 4.79689 4.90945 5.10015 5.23173 5.28008 5.31521 5.32333 5.39319 5.57761 5.60527 5.66982 6.01921 6.17777 6.33075 6.48329 6.57942 6.72868 6.74490 7.28058 8.83141 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.046546 B = 0.005139 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.415757 B = 5447.469613 C = 5770.845052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.173 3.827 4 H 0.077 0.923 5 N -0.829 5.829 6 C -0.210 4.210 7 C -0.206 4.206 8 C -0.030 4.030 9 N -0.443 5.443 10 C 0.119 3.881 11 C 0.024 3.976 12 C -0.548 4.548 13 H 0.072 0.928 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.264 1.264 20 C -0.028 4.028 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.343 0.657 27 H 0.341 0.659 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.088 0.912 31 H 0.090 0.910 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.265 0.735 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 7.005 -8.085 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.061 3.939 4 H 0.095 0.905 5 N -0.357 5.357 6 C -0.219 4.219 7 C -0.231 4.231 8 C -0.161 4.161 9 N -0.116 5.116 10 C -0.002 4.002 11 C -0.014 4.014 12 C -0.586 4.586 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.160 4.160 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.164 0.836 29 H 0.183 0.817 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.064 6.706 -7.580 14.272 hybrid contribution 2.006 -0.317 0.644 2.131 sum -8.058 6.389 -6.935 12.403 Atomic orbital electron populations 1.21627 0.94332 1.01114 1.02320 1.21473 0.96809 0.95272 1.01084 1.19670 0.85880 0.95080 0.93316 0.90508 1.59093 1.65984 1.07020 1.03585 1.20623 0.97383 1.10697 0.93186 1.20778 0.91378 1.11328 0.99602 1.22169 1.00451 1.09544 0.83975 1.44520 1.06515 1.52329 1.08279 1.21978 0.87599 0.99200 0.91468 1.19218 0.95505 0.92029 0.94656 1.21476 1.17599 0.95175 1.24387 0.90969 1.26021 0.99973 0.94664 0.98906 1.70115 1.43457 1.00219 1.43399 0.85403 0.78846 0.77503 0.78727 1.18847 1.21056 1.18847 1.21966 0.82742 1.10891 1.00367 0.91569 0.93003 0.93066 0.92606 0.93447 0.84443 0.84601 0.83560 0.81748 0.89346 0.89191 0.99155 0.99210 0.92583 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 71.98 0.71 -2.14 16 2 C -0.11 -2.68 5.56 30.59 0.17 -2.51 16 3 C 0.17 4.29 3.20 44.17 0.14 4.43 16 4 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 5 N -0.83 -17.10 8.60 -171.80 -1.48 -18.58 16 6 C -0.21 -6.37 5.11 -19.99 -0.10 -6.47 16 7 C -0.21 -6.23 10.24 22.14 0.23 -6.01 16 8 C -0.03 -1.03 11.43 83.21 0.95 -0.08 16 9 N -0.44 -16.46 2.75 -524.48 -1.44 -17.90 16 10 C 0.12 4.72 6.03 86.38 0.52 5.24 16 11 C 0.02 1.22 5.30 29.85 0.16 1.38 16 12 C -0.55 -29.90 9.11 25.60 0.23 -29.67 16 13 H 0.07 3.65 7.74 -2.92 -0.02 3.62 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 16 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 C -0.03 -0.96 11.35 83.21 0.94 -0.02 16 21 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.34 6.60 9.06 -89.69 -0.81 5.79 16 27 H 0.34 6.62 8.25 -89.69 -0.74 5.88 16 28 H 0.15 3.66 7.73 -2.91 -0.02 3.63 16 29 H 0.17 5.00 8.06 -2.91 -0.02 4.97 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.16 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -62.18 296.30 3.32 -58.86 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.49 Total: 24.02 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.41 Total: -35.21 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.63 Total: -92.48 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -62.18 3.32 -58.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.373 kcal (2) G-P(sol) polarization free energy of solvation -62.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds