Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 H 1.08993 * 109.47513 * 305.00394 * 3 2 1 5 5 N 1.46902 * 109.47097 * 65.00452 * 3 2 1 6 6 C 1.50700 * 109.47136 * 185.00195 * 3 2 1 7 7 C 1.40890 * 126.29136 * 279.97615 * 6 3 2 8 8 C 1.34856 * 107.41842 * 180.02562 * 7 6 3 9 9 N 1.36343 * 108.21378 * 0.02562 * 8 7 6 10 10 C 1.46500 * 125.63153 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47473 * 90.02303 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.34850 * 126.29166 * 100.29140 * 6 3 2 21 21 H 1.09005 * 109.46979 * 299.99249 * 1 2 3 22 22 H 1.09001 * 109.47542 * 59.99532 * 1 2 3 23 23 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46997 * 240.00197 * 2 1 3 25 25 H 1.09001 * 109.47542 * 120.00468 * 2 1 3 26 26 H 1.00907 * 110.99862 * 296.04532 * 5 3 2 27 27 H 1.00907 * 111.00014 * 59.99796 * 5 3 2 28 28 H 1.08004 * 126.29267 * 359.97438 * 7 6 3 29 29 H 1.07993 * 125.88867 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47129 * 330.02045 * 10 9 8 31 31 H 1.08998 * 109.46845 * 210.02852 * 10 9 8 32 32 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 35 35 H 1.08000 * 125.89321 * 359.97438 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6514 2.0992 1.2553 6 6 3.5418 1.4443 -0.1239 7 6 4.4646 1.2161 0.9160 8 6 5.7011 1.3063 0.3854 9 7 5.5754 1.5823 -0.9438 10 6 6.6822 1.7590 -1.8872 11 6 7.0446 0.4080 -2.5073 12 6 8.1827 0.5900 -3.4781 13 1 8.6056 1.5710 -3.6367 14 6 8.6848 -0.4962 -4.1632 15 7 9.6783 -0.3375 -5.0100 16 14 7.9538 -2.1931 -3.8883 17 1 6.8430 -2.4150 -4.8487 18 1 9.0023 -3.2236 -4.0976 19 1 7.4348 -2.2896 -2.5003 20 6 4.2496 1.6704 -1.2492 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.6476 2.1683 1.3316 27 1 2.0423 1.6178 2.0513 28 1 4.2257 1.0082 1.9486 29 1 6.6305 1.1814 0.9211 30 1 7.5478 2.1609 -1.3606 31 1 6.3820 2.4511 -2.6739 32 1 6.1790 0.0061 -3.0339 33 1 7.3448 -0.2840 -1.7204 34 1 10.0313 -1.1015 -5.4923 35 1 3.8374 1.8827 -2.2246 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085839420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = 28.546113 kcal Electronic energy + Delta-G solvation = -14765.617269 eV Core-core repulsion = 12377.627534 eV Total energy + Delta-G solvation = -2387.989735 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.75063 -36.71771 -34.03976 -32.13174 -30.77789 -29.22134 -28.64459 -25.60759 -24.18666 -21.42177 -21.11655 -19.55233 -18.89790 -17.26653 -16.37257 -15.36979 -14.65684 -14.58276 -14.32080 -13.91346 -13.65179 -13.14719 -12.91288 -12.67947 -12.61776 -12.31523 -11.68704 -11.57504 -11.45576 -11.12860 -10.94743 -10.74092 -10.37728 -10.21469 -9.95209 -9.42809 -8.68071 -8.65138 -7.92574 -7.60468 -6.18639 -4.19743 2.81274 3.22900 3.30904 3.35597 3.37118 3.60504 4.33749 4.80571 4.95576 5.04474 5.10417 5.15134 5.45578 5.53799 5.55526 5.68180 5.70877 5.79927 5.93981 6.00312 6.02184 6.12210 6.22636 6.31396 6.60093 6.81201 7.00585 7.09716 7.26057 7.44598 7.54687 7.55517 7.79308 7.96516 8.33308 8.82674 9.42286 10.94001 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.037153 B = 0.005941 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.469292 B = 4711.484024 C = 5143.431964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.154 4.154 3 C 0.170 3.830 4 H 0.077 0.923 5 N -0.838 5.838 6 C -0.171 4.171 7 C -0.198 4.198 8 C -0.014 4.014 9 N -0.434 5.434 10 C 0.112 3.888 11 C -0.022 4.022 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.265 1.265 20 C -0.006 4.006 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.333 0.667 27 H 0.338 0.662 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.998 1.466 10.605 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.058 3.942 4 H 0.095 0.905 5 N -0.367 5.367 6 C -0.178 4.178 7 C -0.223 4.223 8 C -0.146 4.146 9 N -0.106 5.106 10 C -0.008 4.008 11 C -0.060 4.060 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.706 3.294 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.139 4.139 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.172 0.828 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.163 2.071 9.935 17.424 hybrid contribution -0.639 -1.948 0.192 2.059 sum -14.802 0.123 10.127 17.935 Atomic orbital electron populations 1.21821 0.96321 1.01540 1.01444 1.22343 0.95139 0.99053 1.02833 1.19587 0.90867 0.91233 0.92504 0.90535 1.58876 1.15052 1.58562 1.04205 1.19060 0.93554 1.11496 0.93665 1.20434 0.91744 1.11743 0.98380 1.21754 0.99194 1.09442 0.84177 1.44512 1.06419 1.51494 1.08188 1.22095 0.86653 1.01080 0.90960 1.19906 0.97424 0.92172 0.96515 1.20910 1.16034 0.96782 1.22987 0.90663 1.24956 0.94481 0.99082 0.94414 1.69896 1.25507 1.31337 1.26745 0.86781 0.79084 0.84130 0.79376 1.20133 1.21117 1.19004 1.21493 0.82856 1.10200 0.99327 0.93151 0.92635 0.92856 0.91388 0.92126 0.85406 0.84924 0.85867 0.82844 0.89899 0.89949 0.96380 0.95922 0.92445 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.68 37.15 0.36 -1.01 16 2 C -0.15 -1.73 5.56 -26.74 -0.15 -1.88 16 3 C 0.17 2.12 3.26 -68.86 -0.22 1.89 16 4 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 5 N -0.84 -9.28 9.09 -5.66 -0.05 -9.33 16 6 C -0.17 -2.65 5.12 -104.82 -0.54 -3.18 16 7 C -0.20 -3.10 10.24 -39.78 -0.41 -3.51 16 8 C -0.01 -0.24 11.43 -16.75 -0.19 -0.43 16 9 N -0.43 -7.83 2.75 -117.13 -0.32 -8.15 16 10 C 0.11 2.17 6.03 -4.04 -0.02 2.15 16 11 C -0.02 -0.52 4.36 -27.88 -0.12 -0.64 16 12 C -0.53 -14.57 9.66 -34.44 -0.33 -14.90 16 13 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 16 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 20 C -0.01 -0.10 11.35 -16.75 -0.19 -0.29 16 21 H 0.05 0.39 6.87 -51.93 -0.36 0.03 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.33 2.99 7.55 -39.29 -0.30 2.69 16 27 H 0.34 3.54 8.25 -39.29 -0.32 3.21 16 28 H 0.12 1.68 7.72 -52.48 -0.41 1.27 16 29 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 33 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -30.09 290.75 -7.34 -37.44 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.54 Total: 4.86 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.92 Total: -19.82 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.40 Total: -43.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.09 -7.34 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.984 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds