Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47359 * 2 1 4 4 C 1.46896 * 111.00181 * 183.79916 * 3 2 1 5 5 H 1.09000 * 109.47110 * 324.76589 * 4 3 2 6 6 C 1.52999 * 109.47157 * 204.76432 * 4 3 2 7 7 C 1.53000 * 109.47525 * 65.20725 * 6 4 3 8 8 C 1.50702 * 109.47027 * 84.76602 * 4 3 2 9 9 C 1.41165 * 126.25093 * 40.01946 * 8 4 3 10 10 C 1.34801 * 107.51288 * 180.22941 * 9 8 4 11 11 N 1.36849 * 108.18254 * 359.58231 * 10 9 8 12 12 C 1.37494 * 125.69618 * 180.16310 * 11 10 9 13 13 H 1.07993 * 120.00405 * 199.38078 * 12 11 10 14 14 C 1.38922 * 119.99828 * 19.37952 * 12 11 10 15 15 N 1.31361 * 119.99840 * 10.13231 * 14 12 11 16 16 Si 1.86803 * 120.00198 * 190.13313 * 14 12 11 17 17 H 1.48500 * 109.46797 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47168 * 119.99997 * 16 14 12 19 19 H 1.48499 * 109.47130 * 240.00261 * 16 14 12 20 20 C 1.34807 * 126.24208 * 219.98734 * 8 4 3 21 21 H 1.09001 * 109.46747 * 60.00137 * 1 2 3 22 22 H 1.08996 * 109.47462 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47184 * 300.00595 * 1 2 3 24 24 H 1.09000 * 109.47184 * 239.99405 * 2 1 3 25 25 H 1.09001 * 109.46747 * 119.99863 * 2 1 3 26 26 H 1.00899 * 110.99761 * 307.75724 * 3 2 1 27 27 H 1.09004 * 109.47216 * 185.20927 * 6 4 3 28 28 H 1.08999 * 109.47167 * 305.20339 * 6 4 3 29 29 H 1.08998 * 109.46674 * 64.32687 * 7 6 4 30 30 H 1.08997 * 109.47202 * 184.33286 * 7 6 4 31 31 H 1.08997 * 109.46720 * 304.33622 * 7 6 4 32 32 H 1.07998 * 126.24210 * 359.97438 * 9 8 4 33 33 H 1.07995 * 125.90870 * 179.72071 * 10 9 8 34 34 H 0.97003 * 119.99872 * 179.97438 * 15 14 12 35 35 H 1.07995 * 125.91023 * 0.02562 * 20 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4853 1.4251 -0.0909 5 1 3.9066 0.5831 0.4583 6 6 3.9979 2.7347 0.5116 7 6 3.6889 2.7624 2.0098 8 6 3.9015 1.3406 -1.5368 9 6 3.2714 1.9812 -2.6256 10 6 3.9482 1.6440 -3.7416 11 7 4.9827 0.8234 -3.3821 12 6 5.9038 0.2708 -4.2403 13 1 6.4788 -0.5904 -3.9338 14 6 6.0950 0.8204 -5.5018 15 7 5.5493 1.9764 -5.8041 16 14 7.1279 -0.0846 -6.7682 17 1 7.6266 -1.3552 -6.1835 18 1 6.2979 -0.3812 -7.9634 19 1 8.2807 0.7636 -7.1642 20 6 4.9438 0.6398 -2.0265 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5965 1.9181 -0.7447 27 1 5.0752 2.8067 0.3614 28 1 3.5062 3.5762 0.0236 29 1 4.2420 1.9672 2.5095 30 1 3.9844 3.7263 2.4240 31 1 2.6201 2.6133 2.1631 32 1 2.4029 2.6211 -2.5744 33 1 3.7157 1.9675 -4.7454 34 1 5.6831 2.3603 -6.6848 35 1 5.6295 0.0378 -1.4490 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085840794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = 13.244567 kcal Electronic energy + Delta-G solvation = -15198.008071 eV Core-core repulsion = 12809.354810 eV Total energy + Delta-G solvation = -2388.653260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59819 -38.13143 -35.29278 -34.18969 -31.97884 -30.28535 -29.13862 -27.00288 -25.29391 -22.95083 -22.04640 -21.50831 -20.08801 -19.23460 -17.45272 -16.53545 -16.20023 -15.70118 -15.28269 -14.73939 -14.61032 -14.47491 -14.38029 -13.54362 -13.44343 -13.26774 -12.94363 -12.75222 -12.59246 -12.55062 -12.40410 -12.13038 -12.06925 -11.77149 -11.58831 -11.46520 -11.08963 -9.45176 -9.22827 -8.67746 -8.43632 -6.37308 1.27902 1.34008 1.50425 1.94435 2.13051 2.43686 3.01876 3.35397 3.49035 4.18085 4.36058 4.47376 4.48009 4.59876 4.64920 4.71770 4.78033 4.91971 5.04118 5.06703 5.10240 5.16653 5.25543 5.28922 5.33995 5.38391 5.44890 5.65940 5.69727 5.76448 5.95771 6.36333 6.59236 6.61719 6.74296 7.26187 7.67536 8.41435 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.038431 B = 0.006695 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.413069 B = 4181.411436 C = 4489.416369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.670 5.670 4 C 0.176 3.824 5 H 0.066 0.934 6 C -0.099 4.099 7 C -0.133 4.133 8 C -0.214 4.214 9 C -0.252 4.252 10 C -0.031 4.031 11 N -0.276 5.276 12 C -0.385 4.385 13 H 0.108 0.892 14 C 0.000 4.000 15 N -0.879 5.879 16 Si 1.014 2.986 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.098 4.098 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.005 0.995 25 H 0.072 0.928 26 H 0.337 0.663 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.282 0.718 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 -2.011 7.972 9.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 N -0.299 5.299 4 C 0.065 3.935 5 H 0.084 0.916 6 C -0.137 4.137 7 C -0.190 4.190 8 C -0.223 4.223 9 C -0.277 4.277 10 C -0.169 4.169 11 N 0.066 4.934 12 C -0.512 4.512 13 H 0.125 0.875 14 C -0.206 4.206 15 N -0.511 5.511 16 Si 0.834 3.166 17 H -0.179 1.179 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.233 4.233 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.092 0.908 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.248 -1.971 8.270 9.504 hybrid contribution 0.774 -0.372 -1.959 2.139 sum -3.474 -2.342 6.310 7.575 Atomic orbital electron populations 1.21707 0.93739 1.02217 1.02167 1.21899 0.96398 0.89867 0.99359 1.60927 1.05240 1.12381 1.51378 1.19699 0.87684 0.97570 0.88525 0.91603 1.21378 0.99150 0.96469 0.96697 1.21610 1.02377 1.00964 0.94054 1.20034 1.00482 1.05470 0.96307 1.20405 1.04944 1.09954 0.92353 1.21930 0.92529 1.03041 0.99355 1.40518 1.17705 1.30071 1.05106 1.20390 1.19563 1.14489 0.96775 0.87451 1.26593 0.98197 0.95504 1.00282 1.70047 1.42232 1.16028 1.22766 0.84599 0.77203 0.78313 0.76506 1.17863 1.19253 1.19341 1.21684 1.05683 1.12038 0.83933 0.93406 0.91302 0.91282 0.97631 0.90981 0.84482 0.93551 0.93166 0.93166 0.92663 0.91612 0.85856 0.84150 0.90760 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 10.13 71.98 0.73 -2.54 16 2 C 0.05 1.58 6.20 86.30 0.53 2.11 16 3 N -0.67 -20.98 5.66 -495.46 -2.80 -23.79 16 4 C 0.18 6.21 2.43 44.17 0.11 6.32 16 5 H 0.07 2.29 7.85 -2.39 -0.02 2.27 16 6 C -0.10 -3.20 5.59 30.59 0.17 -3.02 16 7 C -0.13 -3.42 9.85 71.98 0.71 -2.71 16 8 C -0.21 -9.57 4.83 -19.93 -0.10 -9.66 16 9 C -0.25 -12.09 9.99 22.20 0.22 -11.87 16 10 C -0.03 -1.69 10.05 83.12 0.84 -0.85 16 11 N -0.28 -15.33 2.91 -350.09 -1.02 -16.34 16 12 C -0.38 -21.23 10.08 83.97 0.85 -20.39 16 13 H 0.11 5.59 7.85 -2.91 -0.02 5.57 16 14 C 0.00 -0.02 5.37 84.93 0.46 0.44 16 15 N -0.88 -48.30 10.82 21.65 0.23 -48.07 16 16 Si 1.01 39.83 29.56 68.60 2.03 41.85 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.10 -4.89 11.28 83.12 0.94 -3.95 16 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.01 0.19 7.93 -2.39 -0.02 0.17 16 25 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 26 H 0.34 11.09 7.16 -89.69 -0.64 10.45 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.68 7.64 -2.39 -0.02 1.67 16 32 H 0.12 5.30 7.48 -2.91 -0.02 5.28 16 33 H 0.14 8.09 6.33 -2.91 -0.02 8.08 16 34 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.14 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -59.67 289.80 4.31 -55.36 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.41 Total: 37.11 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 5.45 Total: -46.13 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.59 Total: -88.20 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -59.67 4.31 -55.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085840794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.607 kcal (2) G-P(sol) polarization free energy of solvation -59.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds