Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 C 1.53002 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47011 * 55.00808 * 4 3 2 6 6 N 1.46897 * 109.47476 * 295.00084 * 4 3 2 7 7 C 1.46904 * 111.00050 * 153.30030 * 6 4 3 8 8 C 1.50702 * 109.46842 * 175.00028 * 4 3 2 9 9 C 1.41168 * 126.24501 * 75.86276 * 8 4 3 10 10 C 1.34805 * 107.50730 * 179.82351 * 9 8 4 11 11 N 1.36845 * 108.18522 * 0.43451 * 10 9 8 12 12 C 1.37494 * 125.69581 * 179.69931 * 11 10 9 13 13 H 1.08003 * 120.00215 * 197.66717 * 12 11 10 14 14 C 1.38926 * 120.00086 * 17.66473 * 12 11 10 15 15 N 1.31356 * 119.99512 * 12.25180 * 14 12 11 16 16 Si 1.86798 * 120.00333 * 192.25383 * 14 12 11 17 17 H 1.48502 * 109.46702 * 60.00150 * 16 14 12 18 18 H 1.48495 * 109.47292 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47145 * 300.00007 * 16 14 12 20 20 C 1.34801 * 126.24815 * 256.16810 * 8 4 3 21 21 H 1.08992 * 109.47382 * 59.99480 * 1 2 3 22 22 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46979 * 299.99696 * 1 2 3 24 24 H 1.09000 * 109.46979 * 240.00304 * 2 1 3 25 25 H 1.09000 * 109.47274 * 119.99863 * 2 1 3 26 26 H 1.09000 * 109.47097 * 60.00377 * 3 2 1 27 27 H 1.09002 * 109.47471 * 300.00337 * 3 2 1 28 28 H 1.00901 * 110.99745 * 29.34528 * 6 4 3 29 29 H 1.08993 * 109.46898 * 175.57800 * 7 6 4 30 30 H 1.08997 * 109.47051 * 55.57220 * 7 6 4 31 31 H 1.09008 * 109.46609 * 295.57335 * 7 6 4 32 32 H 1.08000 * 126.24737 * 359.97438 * 9 8 4 33 33 H 1.08004 * 125.90790 * 180.13120 * 10 9 8 34 34 H 0.97003 * 119.99861 * 180.02562 * 15 14 12 35 35 H 1.08009 * 125.90428 * 0.02562 * 20 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8531 -0.8410 6 7 4.0592 0.8574 1.2561 7 6 5.3899 0.2618 1.0760 8 6 4.0723 2.8580 -0.1232 9 6 4.0879 3.8306 0.8998 10 6 4.6169 4.9567 0.3808 11 7 4.9214 4.7197 -0.9321 12 6 5.4742 5.6279 -1.8040 13 1 5.4182 5.4572 -2.8689 14 6 6.1047 6.7652 -1.3150 15 7 6.3875 6.8606 -0.0358 16 14 6.5504 8.1585 -2.4766 17 1 5.3176 8.6802 -3.1196 18 1 7.2099 9.2479 -1.7129 19 1 7.4783 7.6548 -3.5209 20 6 4.5835 3.4282 -1.2326 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.4054 0.1793 1.6179 29 1 5.7618 -0.0940 2.0367 30 1 6.0728 1.0119 0.6772 31 1 5.3224 -0.5746 0.3802 32 1 3.7416 3.6963 1.9140 33 1 4.7691 5.8866 0.9085 34 1 6.8274 7.6548 0.3057 35 1 4.7049 2.9486 -2.1927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085842398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = 16.323607 kcal Electronic energy + Delta-G solvation = -15112.529253 eV Core-core repulsion = 12724.009510 eV Total energy + Delta-G solvation = -2388.519743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.47129 -38.27763 -35.26896 -34.47478 -32.11493 -30.29003 -28.54972 -26.68070 -25.51993 -23.69872 -21.75270 -21.40876 -19.91337 -19.01741 -17.33870 -16.67927 -16.31458 -16.17150 -15.10448 -14.76622 -14.60770 -14.37398 -13.97369 -13.90188 -13.46026 -13.23807 -13.02537 -12.84439 -12.73072 -12.54595 -12.36900 -12.17590 -12.04745 -11.76579 -11.48538 -11.34972 -11.03787 -9.33608 -9.16420 -8.61807 -8.35244 -6.29212 1.32481 1.37067 1.50178 1.99257 2.17307 2.55605 3.07815 3.38758 3.58136 4.11039 4.18204 4.24670 4.49936 4.57839 4.69012 4.72793 4.82198 4.88535 4.93341 5.02863 5.07906 5.12315 5.17536 5.20081 5.36864 5.40256 5.46466 5.56078 5.77707 5.85410 6.05122 6.40025 6.65780 6.75890 6.88076 7.34552 7.75698 8.46435 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.043072 B = 0.006303 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.925636 B = 4441.494334 C = 4726.252835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.107 4.107 4 C 0.179 3.821 5 H 0.034 0.966 6 N -0.692 5.692 7 C 0.038 3.962 8 C -0.178 4.178 9 C -0.228 4.228 10 C -0.042 4.042 11 N -0.275 5.275 12 C -0.386 4.386 13 H 0.108 0.892 14 C -0.001 4.001 15 N -0.879 5.879 16 Si 1.014 2.986 17 H -0.261 1.261 18 H -0.271 1.271 19 H -0.259 1.259 20 C -0.106 4.106 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.346 0.654 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.281 0.719 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -9.866 -0.570 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.145 4.145 4 C 0.069 3.931 5 H 0.052 0.948 6 N -0.325 5.325 7 C -0.111 4.111 8 C -0.186 4.186 9 C -0.253 4.253 10 C -0.179 4.179 11 N 0.066 4.934 12 C -0.513 4.513 13 H 0.126 0.874 14 C -0.206 4.206 15 N -0.511 5.511 16 Si 0.833 3.167 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.183 1.183 20 C -0.241 4.241 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.166 0.834 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.611 -8.886 -0.425 10.518 hybrid contribution 0.370 0.170 -0.783 0.882 sum -5.241 -8.716 -1.208 10.242 Atomic orbital electron populations 1.21733 0.94849 1.02154 1.01817 1.21570 0.96810 0.95388 1.02058 1.21677 0.93382 0.97553 1.01888 1.19545 0.93942 0.89852 0.89754 0.94786 1.60188 1.04513 1.38381 1.29421 1.22084 0.91108 0.96843 1.01106 1.19141 1.10344 0.96216 0.92878 1.20337 1.12511 0.93725 0.98715 1.21953 1.08919 1.00616 0.86420 1.40425 1.36670 1.07894 1.08367 1.20320 1.37536 1.02575 0.90909 0.87395 1.26583 0.94075 1.01373 0.98566 1.70068 1.36326 1.29323 1.15335 0.84718 0.78996 0.75709 0.77231 1.18562 1.19590 1.18287 1.21601 1.15843 0.86260 1.00422 0.93092 0.91434 0.92716 0.92027 0.91183 0.92222 0.92659 0.83358 0.90453 0.94672 0.95123 0.86664 0.84308 0.90856 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.12 -2.64 5.77 30.60 0.18 -2.47 16 3 C -0.11 -3.22 4.78 30.60 0.15 -3.07 16 4 C 0.18 6.36 2.48 44.17 0.11 6.47 16 5 H 0.03 1.19 7.82 -2.39 -0.02 1.17 16 6 N -0.69 -22.25 6.49 -518.52 -3.36 -25.61 16 7 C 0.04 1.15 10.47 127.69 1.34 2.49 16 8 C -0.18 -8.28 4.88 -19.93 -0.10 -8.37 16 9 C -0.23 -11.68 10.60 22.20 0.24 -11.44 16 10 C -0.04 -2.38 10.07 83.12 0.84 -1.55 16 11 N -0.27 -15.67 2.91 -350.07 -1.02 -16.69 16 12 C -0.39 -21.68 10.08 83.97 0.85 -20.84 16 13 H 0.11 5.66 7.86 -2.91 -0.02 5.64 16 14 C 0.00 -0.04 5.36 84.93 0.45 0.42 16 15 N -0.88 -49.36 10.82 21.65 0.23 -49.12 16 16 Si 1.01 40.44 29.57 68.60 2.03 42.46 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.11 -5.42 11.27 83.12 0.94 -4.48 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.37 6.43 -2.39 -0.02 1.35 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.35 8.97 6.54 -89.69 -0.59 8.38 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.28 7.99 -2.39 -0.02 1.27 16 31 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.12 5.57 8.06 -2.91 -0.02 5.54 16 33 H 0.14 8.29 6.31 -2.91 -0.02 8.27 16 34 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.14 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -63.51 289.28 4.05 -59.46 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.47 Total: 34.45 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 5.70 Total: -44.94 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.15 Total: -91.43 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -63.51 4.05 -59.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085842398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.784 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds