Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53003 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47340 * 304.99682 * 4 3 2 6 6 N 1.46907 * 109.47026 * 65.00131 * 4 3 2 7 7 C 1.46902 * 110.99766 * 204.35383 * 6 4 3 8 8 C 1.50698 * 109.47149 * 185.00043 * 4 3 2 9 9 C 1.41179 * 126.24640 * 282.74322 * 8 4 3 10 10 C 1.34808 * 107.50892 * 180.22581 * 9 8 4 11 11 N 1.36847 * 108.18441 * 359.57875 * 10 9 8 12 12 C 1.37488 * 125.69379 * 180.16281 * 11 10 9 13 13 H 1.08001 * 120.00377 * 199.45227 * 12 11 10 14 14 C 1.38922 * 120.00024 * 19.46144 * 12 11 10 15 15 N 1.31356 * 120.00143 * 11.05456 * 14 12 11 16 16 Si 1.86802 * 120.00061 * 191.05664 * 14 12 11 17 17 H 1.48505 * 109.46682 * 89.99630 * 16 14 12 18 18 H 1.48494 * 109.47098 * 209.99733 * 16 14 12 19 19 H 1.48501 * 109.47053 * 329.99675 * 16 14 12 20 20 C 1.34804 * 126.25165 * 102.69880 * 8 4 3 21 21 H 1.09003 * 109.46724 * 299.99552 * 1 2 3 22 22 H 1.08996 * 109.46888 * 59.99741 * 1 2 3 23 23 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47324 * 240.00018 * 2 1 3 25 25 H 1.08999 * 109.47195 * 119.99564 * 2 1 3 26 26 H 1.08994 * 109.47084 * 60.00360 * 3 2 1 27 27 H 1.08996 * 109.47558 * 299.99849 * 3 2 1 28 28 H 1.00898 * 110.99948 * 80.40169 * 6 4 3 29 29 H 1.09000 * 109.46651 * 184.61299 * 7 6 4 30 30 H 1.09005 * 109.46849 * 304.61006 * 7 6 4 31 31 H 1.08992 * 109.47538 * 64.61128 * 7 6 4 32 32 H 1.08003 * 126.24303 * 359.96455 * 9 8 4 33 33 H 1.07995 * 125.90247 * 179.71549 * 10 9 8 34 34 H 0.96991 * 120.00644 * 180.02562 * 15 14 12 35 35 H 1.08005 * 125.90171 * 0.02562 * 20 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0602 0.8570 -1.2544 7 6 5.4136 0.3107 -1.0871 8 6 4.0723 2.8579 0.1245 9 6 4.1142 3.8220 -0.9061 10 6 4.6342 4.9510 -0.3844 11 7 4.9080 4.7242 0.9371 12 6 5.4455 5.6374 1.8132 13 1 5.9127 5.2994 2.7264 14 6 5.3877 6.9949 1.5238 15 7 4.6378 7.4242 0.5345 16 14 6.3764 8.2098 2.5416 17 1 7.7182 8.3900 1.9313 18 1 5.6698 9.5153 2.5781 19 1 6.5273 7.6897 3.9243 20 6 4.5628 3.4350 1.2396 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 4.0330 1.5325 -2.0034 29 1 5.7843 -0.0424 -2.0493 30 1 6.0750 1.0890 -0.7063 31 1 5.3856 -0.5196 -0.3816 32 1 3.7926 3.6795 -1.9272 33 1 4.8033 5.8753 -0.9167 34 1 4.5977 8.3719 0.3321 35 1 4.6655 2.9617 2.2050 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085842403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = 26.996564 kcal Electronic energy + Delta-G solvation = -15128.284380 eV Core-core repulsion = 12740.227451 eV Total energy + Delta-G solvation = -2388.056929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69566 -36.60180 -33.54840 -33.17658 -30.24118 -28.73423 -26.82435 -24.93954 -24.14044 -22.00432 -20.44110 -19.57380 -18.21431 -17.33794 -15.48193 -14.98936 -14.92538 -14.31336 -13.78657 -13.25882 -13.00139 -12.77503 -12.52666 -12.40682 -11.77081 -11.64128 -11.59097 -11.28227 -11.24058 -11.04380 -10.60769 -10.56386 -10.47372 -10.40947 -10.14891 -9.91466 -9.19738 -7.87944 -7.47637 -6.73787 -6.48294 -4.33094 2.95656 3.04430 3.08162 3.80627 3.90065 4.32447 4.94743 5.01800 5.24534 5.41332 5.48002 5.61775 5.74972 5.93423 6.02920 6.14370 6.23018 6.28252 6.33198 6.35336 6.54607 6.59302 6.65247 6.77656 6.91236 6.95908 7.06378 7.24694 7.45901 7.66254 7.82266 7.99867 8.02467 8.57423 8.62101 9.22645 9.66277 10.34611 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.006371 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.863118 B = 4393.823259 C = 4659.187548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.096 4.096 4 C 0.171 3.829 5 H 0.061 0.939 6 N -0.685 5.685 7 C 0.032 3.968 8 C -0.231 4.231 9 C -0.254 4.254 10 C 0.002 3.998 11 N -0.255 5.255 12 C -0.350 4.350 13 H 0.103 0.897 14 C 0.045 3.955 15 N -0.845 5.845 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.073 4.073 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.341 0.659 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.277 0.723 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -7.970 -1.075 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.134 4.134 4 C 0.061 3.939 5 H 0.079 0.921 6 N -0.315 5.315 7 C -0.118 4.118 8 C -0.240 4.240 9 C -0.278 4.278 10 C -0.136 4.136 11 N 0.088 4.912 12 C -0.478 4.478 13 H 0.121 0.879 14 C -0.164 4.164 15 N -0.476 5.476 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.209 4.209 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.964 -8.116 -0.810 8.389 hybrid contribution 0.920 1.613 0.556 1.939 sum -1.044 -6.503 -0.254 6.591 Atomic orbital electron populations 1.21797 0.97107 1.00570 1.01416 1.21468 0.94288 0.97831 1.01860 1.21511 0.94854 0.95423 1.01617 1.19683 0.93489 0.89955 0.90819 0.92055 1.60804 1.22781 1.40171 1.07711 1.22070 0.90389 0.98844 1.00547 1.19551 1.12946 0.96382 0.95088 1.20170 1.14983 0.94783 0.97858 1.21887 1.07825 0.99512 0.84400 1.40256 1.36458 1.07509 1.07019 1.19908 1.37188 0.86689 1.04008 0.87938 1.25496 0.95593 0.98146 0.97145 1.69930 1.33072 1.16523 1.28101 0.85779 0.79381 0.78958 0.79735 1.19664 1.20286 1.19022 1.21179 1.13393 0.87748 0.98548 0.93273 0.93050 0.93587 0.91148 0.93195 0.92373 0.92311 0.84175 0.92741 0.95484 0.92788 0.87720 0.82482 0.91243 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.65 5.82 -26.73 -0.16 -1.81 16 3 C -0.10 -1.61 4.87 -26.73 -0.13 -1.74 16 4 C 0.17 3.12 2.43 -68.86 -0.17 2.95 16 5 H 0.06 1.12 7.86 -51.93 -0.41 0.71 16 6 N -0.69 -11.38 6.05 -115.24 -0.70 -12.08 16 7 C 0.03 0.49 10.48 60.07 0.63 1.12 16 8 C -0.23 -5.16 4.77 -104.73 -0.50 -5.66 16 9 C -0.25 -6.02 10.00 -39.68 -0.40 -6.42 16 10 C 0.00 0.05 10.05 -16.53 -0.17 -0.12 16 11 N -0.25 -6.89 2.90 -62.00 -0.18 -7.07 16 12 C -0.35 -9.43 10.07 -14.76 -0.15 -9.58 16 13 H 0.10 2.61 7.85 -52.49 -0.41 2.20 16 14 C 0.05 1.16 5.36 -17.50 -0.09 1.07 16 15 N -0.84 -22.68 10.86 55.49 0.60 -22.07 16 16 Si 0.94 19.43 29.57 -169.99 -5.03 14.40 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 C -0.07 -1.78 11.27 -16.53 -0.19 -1.96 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.34 5.83 7.42 -39.29 -0.29 5.53 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.26 7.59 -52.48 -0.40 1.86 16 33 H 0.16 4.31 6.37 -52.49 -0.33 3.97 16 34 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.13 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 289.99 15.07 4.37 4.37 Total: -1.00 -27.51 289.99 -7.47 -34.99 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.60 Total: 11.13 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -0.95 Total: -23.66 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.27 Total: -41.22 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.51 -7.47 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085842403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.984 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds