Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53003 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47340 * 304.99682 * 4 3 2 6 6 N 1.46907 * 109.47026 * 65.00131 * 4 3 2 7 7 C 1.46902 * 110.99766 * 204.35383 * 6 4 3 8 8 C 1.50698 * 109.47149 * 185.00043 * 4 3 2 9 9 C 1.41179 * 126.24640 * 282.74322 * 8 4 3 10 10 C 1.34808 * 107.50892 * 180.22581 * 9 8 4 11 11 N 1.36847 * 108.18441 * 359.57875 * 10 9 8 12 12 C 1.37488 * 125.69379 * 180.16281 * 11 10 9 13 13 H 1.08001 * 120.00377 * 199.45227 * 12 11 10 14 14 C 1.38922 * 120.00024 * 19.46144 * 12 11 10 15 15 N 1.31356 * 120.00143 * 11.05456 * 14 12 11 16 16 Si 1.86802 * 120.00061 * 191.05664 * 14 12 11 17 17 H 1.48505 * 109.46682 * 89.99630 * 16 14 12 18 18 H 1.48494 * 109.47098 * 209.99733 * 16 14 12 19 19 H 1.48501 * 109.47053 * 329.99675 * 16 14 12 20 20 C 1.34804 * 126.25165 * 102.69880 * 8 4 3 21 21 H 1.09003 * 109.46724 * 299.99552 * 1 2 3 22 22 H 1.08996 * 109.46888 * 59.99741 * 1 2 3 23 23 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47324 * 240.00018 * 2 1 3 25 25 H 1.08999 * 109.47195 * 119.99564 * 2 1 3 26 26 H 1.08994 * 109.47084 * 60.00360 * 3 2 1 27 27 H 1.08996 * 109.47558 * 299.99849 * 3 2 1 28 28 H 1.00898 * 110.99948 * 80.40169 * 6 4 3 29 29 H 1.09000 * 109.46651 * 184.61299 * 7 6 4 30 30 H 1.09005 * 109.46849 * 304.61006 * 7 6 4 31 31 H 1.08992 * 109.47538 * 64.61128 * 7 6 4 32 32 H 1.08003 * 126.24303 * 359.96455 * 9 8 4 33 33 H 1.07995 * 125.90247 * 179.71549 * 10 9 8 34 34 H 0.96991 * 120.00644 * 180.02562 * 15 14 12 35 35 H 1.08005 * 125.90171 * 0.02562 * 20 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0602 0.8570 -1.2544 7 6 5.4136 0.3107 -1.0871 8 6 4.0723 2.8579 0.1245 9 6 4.1142 3.8220 -0.9061 10 6 4.6342 4.9510 -0.3844 11 7 4.9080 4.7242 0.9371 12 6 5.4455 5.6374 1.8132 13 1 5.9127 5.2994 2.7264 14 6 5.3877 6.9949 1.5238 15 7 4.6378 7.4242 0.5345 16 14 6.3764 8.2098 2.5416 17 1 7.7182 8.3900 1.9313 18 1 5.6698 9.5153 2.5781 19 1 6.5273 7.6897 3.9243 20 6 4.5628 3.4350 1.2396 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 4.0330 1.5325 -2.0034 29 1 5.7843 -0.0424 -2.0493 30 1 6.0750 1.0890 -0.7063 31 1 5.3856 -0.5196 -0.3816 32 1 3.7926 3.6795 -1.9272 33 1 4.8033 5.8753 -0.9167 34 1 4.5977 8.3719 0.3321 35 1 4.6655 2.9617 2.2050 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085842403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = 11.942516 kcal Electronic energy + Delta-G solvation = -15128.937172 eV Core-core repulsion = 12740.227451 eV Total energy + Delta-G solvation = -2388.709721 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59537 -38.06753 -35.27137 -34.57219 -32.04858 -30.32086 -28.56143 -26.71494 -25.52723 -23.42245 -21.87699 -21.39491 -20.08444 -19.19039 -17.44832 -16.53255 -16.23069 -15.84037 -15.22417 -14.68334 -14.59665 -14.47793 -14.18478 -13.76841 -13.50971 -13.25657 -13.02427 -12.88147 -12.79073 -12.54792 -12.28028 -12.13594 -11.91821 -11.81047 -11.49283 -11.30069 -11.06731 -9.46354 -9.24006 -8.67887 -8.43978 -6.37004 1.29113 1.34390 1.49207 1.94523 2.13373 2.43248 3.01907 3.35501 3.57962 4.12206 4.33409 4.46464 4.51683 4.62502 4.67719 4.72109 4.89394 4.92947 5.02084 5.07797 5.09575 5.11729 5.15521 5.23839 5.34092 5.41636 5.55004 5.68583 5.69520 5.74553 5.95227 6.33953 6.58971 6.59996 6.74151 7.26140 7.67549 8.41438 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.006371 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.863118 B = 4393.823259 C = 4659.187548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.091 4.091 4 C 0.175 3.825 5 H 0.066 0.934 6 N -0.676 5.676 7 C 0.033 3.967 8 C -0.215 4.215 9 C -0.251 4.251 10 C -0.032 4.032 11 N -0.274 5.274 12 C -0.387 4.387 13 H 0.108 0.892 14 C 0.001 3.999 15 N -0.878 5.878 16 Si 1.014 2.986 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.256 1.256 20 C -0.098 4.098 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.339 0.661 29 H 0.077 0.923 30 H 0.002 0.998 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.283 0.717 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -9.050 -0.794 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.130 4.130 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.305 5.305 7 C -0.117 4.117 8 C -0.223 4.223 9 C -0.276 4.276 10 C -0.169 4.169 11 N 0.067 4.933 12 C -0.514 4.514 13 H 0.126 0.874 14 C -0.205 4.205 15 N -0.510 5.510 16 Si 0.834 3.166 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.179 1.179 20 C -0.233 4.233 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.156 0.844 29 H 0.096 0.904 30 H 0.020 0.980 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.025 -9.226 -0.535 9.461 hybrid contribution 0.914 1.886 0.420 2.137 sum -1.111 -7.340 -0.116 7.424 Atomic orbital electron populations 1.21775 0.95717 1.01825 1.01382 1.21377 0.95469 0.95547 1.02165 1.21445 0.93631 0.97336 1.00541 1.19731 0.94474 0.87421 0.91893 0.91578 1.60839 1.23579 1.39425 1.06614 1.22145 0.89043 0.98371 1.02175 1.20022 1.10722 0.97982 0.93623 1.20424 1.13968 0.94186 0.99025 1.21910 1.10044 1.00012 0.84964 1.40497 1.37240 1.08366 1.07158 1.20359 1.38548 0.87727 1.04768 0.87443 1.26580 0.96064 0.99585 0.98221 1.70039 1.34140 1.17265 1.29569 0.84653 0.77602 0.76117 0.78272 1.18985 1.19564 1.17925 1.21694 1.14148 0.87468 1.00018 0.93381 0.93083 0.91698 0.91031 0.92609 0.93690 0.93175 0.84391 0.90449 0.97966 0.91387 0.85759 0.84235 0.90741 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.11 -2.79 5.82 30.60 0.18 -2.61 16 3 C -0.09 -2.95 4.87 30.60 0.15 -2.80 16 4 C 0.18 6.17 2.43 44.17 0.11 6.28 16 5 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 6 N -0.68 -21.11 6.05 -518.52 -3.14 -24.25 16 7 C 0.03 0.93 10.48 127.69 1.34 2.27 16 8 C -0.21 -9.56 4.77 -19.93 -0.10 -9.65 16 9 C -0.25 -12.02 10.00 22.20 0.22 -11.80 16 10 C -0.03 -1.73 10.05 83.12 0.84 -0.89 16 11 N -0.27 -15.21 2.90 -350.08 -1.02 -16.22 16 12 C -0.39 -21.29 10.07 83.97 0.85 -20.45 16 13 H 0.11 5.57 7.85 -2.91 -0.02 5.55 16 14 C 0.00 0.06 5.36 84.93 0.46 0.51 16 15 N -0.88 -48.23 10.86 21.65 0.24 -47.99 16 16 Si 1.01 39.74 29.57 68.60 2.03 41.77 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 20 C -0.10 -4.87 11.27 83.12 0.94 -3.93 16 21 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.86 7.75 -2.39 -0.02 1.84 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.34 10.98 7.42 -89.70 -0.67 10.31 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.00 0.06 7.90 -2.38 -0.02 0.04 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 5.31 7.59 -2.91 -0.02 5.29 16 33 H 0.14 8.02 6.37 -2.91 -0.02 8.00 16 34 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -59.59 289.99 4.18 -55.41 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.39 Total: 37.00 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 5.69 Total: -45.71 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -3.92 Total: -88.46 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -59.59 4.18 -55.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085842403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.354 kcal (2) G-P(sol) polarization free energy of solvation -59.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds