Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00115 * 2 1 4 4 H 1.09007 * 109.46908 * 36.72541 * 3 2 1 5 5 C 1.50693 * 109.47532 * 276.72793 * 3 2 1 6 6 C 1.41173 * 126.24437 * 314.43744 * 5 3 2 7 7 C 1.34806 * 107.50575 * 180.29733 * 6 5 3 8 8 N 1.36852 * 108.18923 * 359.57211 * 7 6 5 9 9 C 1.37490 * 125.69692 * 180.16879 * 8 7 6 10 10 H 1.08001 * 120.00047 * 199.61033 * 9 8 7 11 11 C 1.38923 * 120.00078 * 19.60137 * 9 8 7 12 12 N 1.31357 * 120.00017 * 10.58328 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 190.58043 * 11 9 8 14 14 H 1.48493 * 109.47152 * 60.00013 * 13 11 9 15 15 H 1.48493 * 109.47215 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46791 * 300.00015 * 13 11 9 17 17 C 1.34811 * 126.24618 * 134.47237 * 5 3 2 18 18 C 1.52996 * 109.47290 * 156.72539 * 3 2 1 19 19 C 1.53000 * 109.47184 * 180.02562 * 18 3 2 20 20 C 1.53008 * 109.47380 * 300.00240 * 18 3 2 21 21 H 1.09000 * 109.47751 * 64.87957 * 1 2 3 22 22 H 1.09009 * 109.47025 * 184.88114 * 1 2 3 23 23 H 1.08998 * 109.47374 * 304.87368 * 1 2 3 24 24 H 1.00893 * 111.00275 * 123.95746 * 2 1 3 25 25 H 1.07991 * 126.24968 * 0.02989 * 6 5 3 26 26 H 1.07999 * 125.90773 * 179.71798 * 7 6 5 27 27 H 0.96995 * 120.00472 * 180.02562 * 12 11 9 28 28 H 1.07989 * 125.91027 * 359.94674 * 17 5 3 29 29 H 1.08993 * 109.47321 * 60.00118 * 18 3 2 30 30 H 1.09007 * 109.47187 * 59.99897 * 19 18 3 31 31 H 1.09001 * 109.47303 * 179.97438 * 19 18 3 32 32 H 1.08995 * 109.47497 * 299.99814 * 19 18 3 33 33 H 1.09000 * 109.46804 * 60.00104 * 20 18 3 34 34 H 1.08999 * 109.47121 * 180.02562 * 20 18 3 35 35 H 1.09007 * 109.46905 * 300.00051 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3566 2.0058 0.6146 5 6 2.0201 1.9001 -1.4109 6 6 2.4890 1.2131 -2.5516 7 6 2.3429 2.0361 -3.6092 8 7 1.7903 3.2071 -3.1661 9 6 1.4841 4.2960 -3.9478 10 1 1.3539 5.2672 -3.4937 11 6 1.3423 4.1469 -5.3217 12 7 1.2933 2.9454 -5.8504 13 14 1.2212 5.6550 -6.4173 14 1 2.4514 6.4736 -6.2703 15 1 1.0759 5.2286 -7.8322 16 1 0.0394 6.4618 -6.0200 17 6 1.5989 3.1156 -1.8141 18 6 3.4152 1.3727 0.5700 19 6 3.9633 2.8011 0.5705 20 6 3.3902 0.8359 2.0026 21 1 -0.3634 0.4362 -0.9304 22 1 -0.3633 -1.0240 0.0875 23 1 -0.3634 0.5876 0.8431 24 1 1.8305 -0.5261 0.7813 25 1 2.8952 0.2127 -2.5724 26 1 2.6128 1.8096 -4.6301 27 1 1.1947 2.8413 -6.8097 28 1 1.1823 3.8840 -1.1801 29 1 4.0540 0.7383 -0.0445 30 1 3.3244 3.4352 1.1854 31 1 4.9747 2.8021 0.9770 32 1 3.9811 3.1839 -0.4498 33 1 2.9997 -0.1817 2.0025 34 1 4.4017 0.8373 2.4088 35 1 2.7514 1.4703 2.6172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085844164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 37.405314 kcal Electronic energy + Delta-G solvation = -15444.420865 eV Core-core repulsion = 13056.815293 eV Total energy + Delta-G solvation = -2387.605571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59034 -37.07616 -33.24800 -33.08509 -30.00770 -27.81333 -26.70826 -25.89279 -24.33846 -22.51318 -19.92962 -19.40762 -18.00891 -17.08206 -15.62957 -15.27430 -14.63533 -14.37800 -13.57119 -13.26586 -12.72697 -12.62380 -12.38500 -12.32093 -11.85532 -11.74979 -11.59845 -11.38572 -11.17126 -10.92430 -10.55190 -10.52306 -10.44367 -10.36676 -10.01009 -9.90538 -9.10566 -7.81081 -7.31592 -6.62597 -6.31595 -4.21439 3.02277 3.09351 3.11969 3.88681 3.99150 4.48798 4.83579 5.12598 5.33970 5.36835 5.45034 5.53440 5.82732 5.87415 5.95480 6.06654 6.14594 6.20116 6.25939 6.40568 6.51981 6.65573 6.69809 6.83034 6.91389 7.13719 7.17897 7.42586 7.55829 7.79502 7.95172 8.03366 8.23039 8.69541 8.80058 9.37128 9.79973 10.44739 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.043060 B = 0.007179 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.103718 B = 3899.060624 C = 4193.640337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.683 5.683 3 C 0.180 3.820 4 H 0.028 0.972 5 C -0.186 4.186 6 C -0.226 4.226 7 C -0.008 4.008 8 N -0.257 5.257 9 C -0.348 4.348 10 H 0.100 0.900 11 C 0.045 3.955 12 N -0.846 5.846 13 Si 0.935 3.065 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.270 1.270 17 C -0.080 4.080 18 C -0.090 4.090 19 C -0.138 4.138 20 C -0.151 4.151 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.010 0.990 24 H 0.326 0.674 25 H 0.106 0.894 26 H 0.156 0.844 27 H 0.276 0.724 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -1.859 9.066 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.314 5.314 3 C 0.071 3.929 4 H 0.046 0.954 5 C -0.194 4.194 6 C -0.250 4.250 7 C -0.145 4.145 8 N 0.085 4.915 9 C -0.476 4.476 10 H 0.118 0.882 11 C -0.164 4.164 12 N -0.477 5.477 13 Si 0.759 3.241 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.195 1.195 17 C -0.216 4.216 18 C -0.109 4.109 19 C -0.196 4.196 20 C -0.209 4.209 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.145 0.855 25 H 0.124 0.876 26 H 0.173 0.827 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.664 -1.722 7.934 8.287 hybrid contribution -0.454 0.923 0.301 1.072 sum 1.211 -0.798 8.235 8.361 Atomic orbital electron populations 1.22107 0.88483 1.00013 1.00719 1.60363 1.07157 1.15186 1.48724 1.19625 0.92782 0.87082 0.93416 0.95442 1.18538 1.12797 0.94940 0.93143 1.20171 1.13443 0.99117 0.92274 1.21925 1.05964 0.87502 0.99140 1.40169 1.35813 1.10861 1.04665 1.19812 1.50054 0.88481 0.89282 0.88187 1.25467 0.94928 0.98248 0.97768 1.69938 1.42795 1.21682 1.13300 0.85885 0.79293 0.80373 0.78509 1.19348 1.20361 1.19468 1.21057 1.15533 0.99424 0.85583 1.21198 0.97444 0.97491 0.94779 1.21725 0.99008 0.95920 1.02945 1.21958 1.01265 1.00374 0.97294 0.91218 0.92683 0.97134 0.85479 0.87590 0.82694 0.91341 0.85771 0.90561 0.93677 0.93822 0.91122 0.92953 0.92899 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.52 60.06 0.63 1.22 16 2 N -0.68 -11.69 6.50 -115.25 -0.75 -12.44 16 3 C 0.18 3.31 2.07 -68.87 -0.14 3.17 16 4 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 5 C -0.19 -4.23 3.67 -104.73 -0.38 -4.62 16 6 C -0.23 -5.61 10.63 -39.69 -0.42 -6.03 16 7 C -0.01 -0.22 10.05 -16.53 -0.17 -0.38 16 8 N -0.26 -7.04 2.90 -62.00 -0.18 -7.22 16 9 C -0.35 -9.51 10.07 -14.76 -0.15 -9.65 16 10 H 0.10 2.57 7.85 -52.49 -0.41 2.16 16 11 C 0.04 1.17 5.37 -17.50 -0.09 1.07 16 12 N -0.85 -23.13 10.85 55.49 0.60 -22.52 16 13 Si 0.93 19.74 29.56 -169.99 -5.03 14.72 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 C -0.08 -1.97 10.93 -16.53 -0.18 -2.15 16 18 C -0.09 -1.43 2.64 -90.62 -0.24 -1.67 16 19 C -0.14 -2.19 8.95 37.16 0.33 -1.86 16 20 C -0.15 -1.90 8.95 37.16 0.33 -1.56 16 21 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 22 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 23 H 0.01 0.15 7.94 -51.93 -0.41 -0.26 16 24 H 0.33 4.73 6.27 -39.30 -0.25 4.49 16 25 H 0.11 2.52 8.06 -52.49 -0.42 2.09 16 26 H 0.16 4.37 6.37 -52.49 -0.33 4.03 16 27 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.12 2.84 8.06 -52.49 -0.42 2.41 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 33 H 0.05 0.60 6.22 -51.93 -0.32 0.28 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -28.57 285.60 -6.95 -35.52 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.42 Total: 10.10 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -0.48 Total: -22.46 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.33 Total: -42.19 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.57 -6.95 -35.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085844164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.930 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds