Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00115 * 2 1 4 4 H 1.09007 * 109.46908 * 36.72541 * 3 2 1 5 5 C 1.50693 * 109.47532 * 276.72793 * 3 2 1 6 6 C 1.41173 * 126.24437 * 314.43744 * 5 3 2 7 7 C 1.34806 * 107.50575 * 180.29733 * 6 5 3 8 8 N 1.36852 * 108.18923 * 359.57211 * 7 6 5 9 9 C 1.37490 * 125.69692 * 180.16879 * 8 7 6 10 10 H 1.08001 * 120.00047 * 199.61033 * 9 8 7 11 11 C 1.38923 * 120.00078 * 19.60137 * 9 8 7 12 12 N 1.31357 * 120.00017 * 10.58328 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 190.58043 * 11 9 8 14 14 H 1.48493 * 109.47152 * 60.00013 * 13 11 9 15 15 H 1.48493 * 109.47215 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46791 * 300.00015 * 13 11 9 17 17 C 1.34811 * 126.24618 * 134.47237 * 5 3 2 18 18 C 1.52996 * 109.47290 * 156.72539 * 3 2 1 19 19 C 1.53000 * 109.47184 * 180.02562 * 18 3 2 20 20 C 1.53008 * 109.47380 * 300.00240 * 18 3 2 21 21 H 1.09000 * 109.47751 * 64.87957 * 1 2 3 22 22 H 1.09009 * 109.47025 * 184.88114 * 1 2 3 23 23 H 1.08998 * 109.47374 * 304.87368 * 1 2 3 24 24 H 1.00893 * 111.00275 * 123.95746 * 2 1 3 25 25 H 1.07991 * 126.24968 * 0.02989 * 6 5 3 26 26 H 1.07999 * 125.90773 * 179.71798 * 7 6 5 27 27 H 0.96995 * 120.00472 * 180.02562 * 12 11 9 28 28 H 1.07989 * 125.91027 * 359.94674 * 17 5 3 29 29 H 1.08993 * 109.47321 * 60.00118 * 18 3 2 30 30 H 1.09007 * 109.47187 * 59.99897 * 19 18 3 31 31 H 1.09001 * 109.47303 * 179.97438 * 19 18 3 32 32 H 1.08995 * 109.47497 * 299.99814 * 19 18 3 33 33 H 1.09000 * 109.46804 * 60.00104 * 20 18 3 34 34 H 1.08999 * 109.47121 * 180.02562 * 20 18 3 35 35 H 1.09007 * 109.46905 * 300.00051 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3566 2.0058 0.6146 5 6 2.0201 1.9001 -1.4109 6 6 2.4890 1.2131 -2.5516 7 6 2.3429 2.0361 -3.6092 8 7 1.7903 3.2071 -3.1661 9 6 1.4841 4.2960 -3.9478 10 1 1.3539 5.2672 -3.4937 11 6 1.3423 4.1469 -5.3217 12 7 1.2933 2.9454 -5.8504 13 14 1.2212 5.6550 -6.4173 14 1 2.4514 6.4736 -6.2703 15 1 1.0759 5.2286 -7.8322 16 1 0.0394 6.4618 -6.0200 17 6 1.5989 3.1156 -1.8141 18 6 3.4152 1.3727 0.5700 19 6 3.9633 2.8011 0.5705 20 6 3.3902 0.8359 2.0026 21 1 -0.3634 0.4362 -0.9304 22 1 -0.3633 -1.0240 0.0875 23 1 -0.3634 0.5876 0.8431 24 1 1.8305 -0.5261 0.7813 25 1 2.8952 0.2127 -2.5724 26 1 2.6128 1.8096 -4.6301 27 1 1.1947 2.8413 -6.8097 28 1 1.1823 3.8840 -1.1801 29 1 4.0540 0.7383 -0.0445 30 1 3.3244 3.4352 1.1854 31 1 4.9747 2.8021 0.9770 32 1 3.9811 3.1839 -0.4498 33 1 2.9997 -0.1817 2.0025 34 1 4.4017 0.8373 2.4088 35 1 2.7514 1.4703 2.6172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085844164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 20.588678 kcal Electronic energy + Delta-G solvation = -15445.150089 eV Core-core repulsion = 13056.815293 eV Total energy + Delta-G solvation = -2388.334795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51385 -38.52442 -35.21831 -34.36512 -31.94411 -29.59245 -27.93348 -27.59293 -26.09769 -24.00097 -21.59525 -21.13869 -19.93436 -18.94070 -17.35122 -16.94317 -16.22740 -15.79535 -15.08749 -14.68840 -14.49418 -14.36201 -13.97668 -13.61122 -13.41273 -13.35663 -13.04762 -12.90826 -12.81816 -12.61233 -12.31975 -12.15390 -12.08080 -11.66197 -11.48877 -11.36086 -11.02444 -9.30479 -9.18256 -8.60770 -8.32095 -6.29427 1.32485 1.36596 1.49537 2.00847 2.17499 2.57726 3.08440 3.39467 3.55231 4.15389 4.20579 4.28515 4.56154 4.61227 4.69979 4.75562 4.84739 4.91872 4.94502 5.08797 5.08940 5.12895 5.15417 5.18567 5.32833 5.44288 5.54677 5.61605 5.79427 5.86758 6.06404 6.40781 6.66792 6.76513 6.89388 7.36041 7.77114 8.47518 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.043060 B = 0.007179 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.103718 B = 3899.060624 C = 4193.640337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.693 5.693 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.167 4.167 6 C -0.231 4.231 7 C -0.038 4.038 8 N -0.277 5.277 9 C -0.385 4.385 10 H 0.107 0.893 11 C -0.001 4.001 12 N -0.880 5.880 13 Si 1.012 2.988 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.259 1.259 17 C -0.100 4.100 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.143 4.143 21 H 0.032 0.968 22 H 0.080 0.920 23 H 0.026 0.974 24 H 0.346 0.654 25 H 0.113 0.887 26 H 0.136 0.864 27 H 0.281 0.719 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -1.682 10.704 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.327 5.327 3 C 0.073 3.927 4 H 0.049 0.951 5 C -0.175 4.175 6 C -0.255 4.255 7 C -0.175 4.175 8 N 0.064 4.936 9 C -0.512 4.512 10 H 0.125 0.875 11 C -0.206 4.206 12 N -0.513 5.513 13 Si 0.832 3.168 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.183 1.183 17 C -0.235 4.235 18 C -0.105 4.105 19 C -0.193 4.193 20 C -0.200 4.200 21 H 0.051 0.949 22 H 0.099 0.901 23 H 0.045 0.955 24 H 0.168 0.832 25 H 0.131 0.869 26 H 0.154 0.846 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.687 -1.563 9.609 9.880 hybrid contribution -0.458 0.797 -0.157 0.933 sum 1.229 -0.766 9.452 9.563 Atomic orbital electron populations 1.22070 0.87930 1.01646 0.99407 1.60197 1.07847 1.14500 1.50149 1.19624 0.94771 0.87804 0.90534 0.95119 1.18991 1.09793 0.93704 0.94963 1.20318 1.13468 0.99223 0.92523 1.21876 1.07896 0.88698 0.99058 1.40403 1.36536 1.10990 1.05627 1.20292 1.51485 0.89005 0.90414 0.87496 1.26577 0.93676 1.01642 0.98747 1.70062 1.43240 1.24068 1.13884 0.84734 0.79733 0.76088 0.76210 1.18527 1.19628 1.18323 1.21524 1.16101 1.00742 0.85089 1.21134 0.95113 0.97385 0.96906 1.21688 1.00707 0.95996 1.00921 1.21878 1.02752 1.00917 0.94491 0.94861 0.90119 0.95519 0.83241 0.86874 0.84603 0.90917 0.84448 0.92028 0.92746 0.91599 0.94826 0.91733 0.91172 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.52 127.69 1.34 2.54 16 2 N -0.69 -22.33 6.50 -518.56 -3.37 -25.69 16 3 C 0.18 6.44 2.07 44.17 0.09 6.53 16 4 H 0.03 1.08 7.74 -2.38 -0.02 1.06 16 5 C -0.17 -7.63 3.67 -19.93 -0.07 -7.71 16 6 C -0.23 -11.73 10.63 22.20 0.24 -11.50 16 7 C -0.04 -2.16 10.05 83.12 0.84 -1.32 16 8 N -0.28 -15.68 2.90 -350.08 -1.02 -16.70 16 9 C -0.38 -21.56 10.07 83.97 0.85 -20.72 16 10 H 0.11 5.61 7.85 -2.91 -0.02 5.59 16 11 C 0.00 -0.07 5.37 84.93 0.46 0.39 16 12 N -0.88 -49.61 10.85 21.65 0.23 -49.38 16 13 Si 1.01 40.57 29.56 68.60 2.03 42.60 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 15 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 17 C -0.10 -5.02 10.93 83.12 0.91 -4.11 16 18 C -0.09 -2.56 2.64 -10.79 -0.03 -2.59 16 19 C -0.14 -4.08 8.95 71.98 0.64 -3.44 16 20 C -0.14 -3.04 8.95 71.98 0.64 -2.40 16 21 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 22 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.03 0.72 7.94 -2.39 -0.02 0.71 16 24 H 0.35 8.92 6.27 -89.70 -0.56 8.36 16 25 H 0.11 5.47 8.06 -2.91 -0.02 5.45 16 26 H 0.14 8.12 6.37 -2.91 -0.02 8.10 16 27 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.14 6.35 8.06 -2.92 -0.02 6.33 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.24 6.95 -2.39 -0.02 1.23 16 33 H 0.06 1.22 6.22 -2.39 -0.01 1.21 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -63.47 285.60 4.28 -59.20 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.50 Total: 34.30 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 5.90 Total: -44.33 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.15 Total: -91.77 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -63.47 4.28 -59.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085844164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.787 kcal (2) G-P(sol) polarization free energy of solvation -63.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds