Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 111.00240 * 2 1 4 4 H 1.08999 * 109.46940 * 34.34069 * 3 2 1 5 5 C 1.50703 * 109.46990 * 154.33830 * 3 2 1 6 6 C 1.41169 * 126.24780 * 39.68802 * 5 3 2 7 7 C 1.34801 * 107.51147 * 179.82582 * 6 5 3 8 8 N 1.36855 * 108.18116 * 0.43841 * 7 6 5 9 9 C 1.37498 * 125.68817 * 179.70070 * 8 7 6 10 10 H 1.08005 * 119.99262 * 198.33683 * 9 8 7 11 11 C 1.38915 * 120.00331 * 18.33922 * 9 8 7 12 12 N 1.31350 * 120.00155 * 10.70860 * 11 9 8 13 13 Si 1.86800 * 119.99801 * 190.70948 * 11 9 8 14 14 H 1.48506 * 109.47147 * 89.99748 * 13 11 9 15 15 H 1.48499 * 109.47232 * 209.99647 * 13 11 9 16 16 H 1.48498 * 109.47317 * 329.99769 * 13 11 9 17 17 C 1.34808 * 126.24713 * 220.00010 * 5 3 2 18 18 C 1.52998 * 109.47127 * 274.33901 * 3 2 1 19 19 C 1.52998 * 109.46974 * 173.96683 * 18 3 2 20 20 C 1.52994 * 109.47124 * 293.96539 * 18 3 2 21 21 H 1.08992 * 109.47466 * 184.70593 * 1 2 3 22 22 H 1.09007 * 109.46913 * 304.71292 * 1 2 3 23 23 H 1.09002 * 109.46853 * 64.70769 * 1 2 3 24 24 H 1.00896 * 110.99993 * 236.04142 * 2 1 3 25 25 H 1.08001 * 126.24366 * 0.02562 * 6 5 3 26 26 H 1.07997 * 125.91226 * 180.13552 * 7 6 5 27 27 H 0.96998 * 119.99874 * 180.02562 * 12 11 9 28 28 H 1.08002 * 125.90203 * 0.02562 * 17 5 3 29 29 H 1.08992 * 109.46980 * 53.97139 * 18 3 2 30 30 H 1.09000 * 109.47534 * 181.13035 * 19 18 3 31 31 H 1.09000 * 109.47360 * 301.13084 * 19 18 3 32 32 H 1.09001 * 109.47366 * 61.12516 * 19 18 3 33 33 H 1.08998 * 109.47066 * 53.50807 * 20 18 3 34 34 H 1.09003 * 109.47007 * 173.50880 * 20 18 3 35 35 H 1.09006 * 109.47501 * 293.50817 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3336 2.0147 0.5797 5 6 3.3712 1.3813 0.6153 6 6 4.3767 0.4085 0.4272 7 6 5.4507 0.7910 1.1465 8 7 5.1432 1.9630 1.7827 9 6 5.9799 2.6663 2.6169 10 1 5.5726 3.4006 3.2962 11 6 7.3489 2.4326 2.5859 12 7 7.8689 1.7025 1.6258 13 14 8.4502 3.1565 3.9097 14 1 8.5632 2.1981 5.0384 15 1 9.7985 3.4166 3.3444 16 1 7.8645 4.4304 4.3989 17 6 3.8641 2.3178 1.4504 18 6 2.0764 1.8866 -1.4383 19 6 2.4808 3.3622 -1.4295 20 6 3.1186 1.0769 -2.2122 21 1 -0.3634 -1.0241 0.0843 22 1 -0.3633 0.5853 0.8448 23 1 -0.3633 0.4391 -0.9292 24 1 1.8306 -0.5262 -0.7813 25 1 4.3007 -0.4785 -0.1842 26 1 6.3896 0.2614 1.2135 27 1 8.8248 1.5390 1.6044 28 1 3.3398 3.1959 1.7975 29 1 1.1036 1.7794 -1.9179 30 1 2.5189 3.7347 -2.4531 31 1 1.7489 3.9361 -0.8611 32 1 3.4626 3.4672 -0.9678 33 1 2.8938 0.0142 -2.1215 34 1 3.0952 1.3648 -3.2633 35 1 4.1095 1.2748 -1.8034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085844168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = 38.190368 kcal Electronic energy + Delta-G solvation = -15565.457340 eV Core-core repulsion = 13177.885811 eV Total energy + Delta-G solvation = -2387.571529 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68485 -37.18353 -33.27998 -32.83873 -29.93324 -27.85983 -26.76613 -25.73881 -24.28971 -22.88842 -19.88461 -19.40753 -17.93294 -17.12945 -15.63383 -15.18149 -14.47448 -14.28751 -13.95145 -13.32491 -12.79279 -12.55137 -12.37735 -12.10106 -11.74601 -11.66331 -11.54731 -11.36874 -11.22082 -10.85449 -10.68204 -10.54868 -10.47304 -10.40082 -10.07437 -9.76464 -9.12114 -7.81487 -7.30970 -6.61991 -6.31883 -4.21202 3.01595 3.09993 3.13251 3.90566 3.97884 4.44982 4.91969 5.12431 5.35002 5.46002 5.48533 5.54954 5.71273 5.72601 6.07428 6.10515 6.14274 6.16086 6.40560 6.46221 6.54342 6.66344 6.69984 6.83693 7.02446 7.09104 7.17047 7.39456 7.57864 7.83852 7.90564 7.93663 8.17528 8.69068 8.78234 9.36827 9.79472 10.43953 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044481 B = 0.007170 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.327633 B = 3904.288149 C = 3980.801197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.681 5.681 3 C 0.177 3.823 4 H 0.062 0.938 5 C -0.178 4.178 6 C -0.235 4.235 7 C -0.006 4.006 8 N -0.258 5.258 9 C -0.345 4.345 10 H 0.101 0.899 11 C 0.044 3.956 12 N -0.846 5.846 13 Si 0.935 3.065 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.139 4.139 20 C -0.142 4.142 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.012 0.988 24 H 0.337 0.663 25 H 0.103 0.897 26 H 0.157 0.843 27 H 0.275 0.725 28 H 0.126 0.874 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -0.111 -3.970 8.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.311 5.311 3 C 0.067 3.933 4 H 0.080 0.920 5 C -0.186 4.186 6 C -0.259 4.259 7 C -0.143 4.143 8 N 0.084 4.916 9 C -0.473 4.473 10 H 0.119 0.881 11 C -0.165 4.165 12 N -0.478 5.478 13 Si 0.760 3.240 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.213 4.213 18 C -0.135 4.135 19 C -0.197 4.197 20 C -0.200 4.200 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.031 0.969 24 H 0.156 0.844 25 H 0.121 0.879 26 H 0.175 0.825 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.085 -0.059 -3.107 7.737 hybrid contribution 0.350 0.631 -0.400 0.825 sum -6.735 0.572 -3.506 7.615 Atomic orbital electron populations 1.22197 0.89532 1.01062 0.99367 1.60566 1.05745 1.14988 1.49832 1.19712 0.93704 0.87412 0.92487 0.91973 1.18459 0.94539 0.99297 1.06306 1.20125 0.94767 1.01607 1.09385 1.21949 1.00166 0.90117 1.02095 1.40182 1.08610 1.14486 1.28327 1.19876 0.88179 1.21850 1.17423 0.88089 1.25454 0.97522 0.96497 0.97003 1.69935 1.13564 1.35542 1.28778 0.85811 0.78802 0.79393 0.80004 1.19748 1.20417 1.19129 1.21027 0.89102 1.02822 1.08378 1.21670 0.97657 0.96454 0.97716 1.21739 1.02703 0.95010 1.00262 1.21874 1.01358 0.98705 0.98042 0.92279 0.92205 0.96950 0.84355 0.87915 0.82531 0.91432 0.85645 0.93254 0.93989 0.93672 0.91056 0.93532 0.94395 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.53 60.07 0.63 1.02 16 2 N -0.68 -11.45 6.36 -115.24 -0.73 -12.18 16 3 C 0.18 3.21 2.25 -68.86 -0.16 3.05 16 4 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 5 C -0.18 -3.96 3.78 -104.72 -0.40 -4.35 16 6 C -0.23 -5.58 8.44 -39.69 -0.34 -5.92 16 7 C -0.01 -0.15 10.07 -16.53 -0.17 -0.32 16 8 N -0.26 -6.98 2.91 -62.00 -0.18 -7.16 16 9 C -0.35 -9.35 10.08 -14.76 -0.15 -9.50 16 10 H 0.10 2.59 7.85 -52.48 -0.41 2.18 16 11 C 0.04 1.13 5.37 -17.51 -0.09 1.04 16 12 N -0.85 -22.80 10.79 55.49 0.60 -22.21 16 13 Si 0.93 19.67 29.56 -169.99 -5.03 14.64 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 C -0.08 -1.89 10.69 -16.53 -0.18 -2.07 16 18 C -0.11 -1.85 2.78 -90.63 -0.25 -2.10 16 19 C -0.14 -2.25 8.99 37.16 0.33 -1.92 16 20 C -0.14 -2.32 8.06 37.15 0.30 -2.02 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 23 H 0.01 0.15 7.50 -51.93 -0.39 -0.24 16 24 H 0.34 5.38 6.62 -39.29 -0.26 5.12 16 25 H 0.10 2.27 7.97 -52.49 -0.42 1.85 16 26 H 0.16 4.34 6.29 -52.49 -0.33 4.01 16 27 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.13 2.82 8.06 -52.49 -0.42 2.40 16 29 H 0.05 0.73 7.46 -51.93 -0.39 0.34 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.35 6.98 -51.93 -0.36 0.99 16 33 H 0.05 0.71 6.28 -51.93 -0.33 0.39 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.54 6.27 -51.93 -0.33 1.21 16 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -27.88 279.77 -6.85 -34.74 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.27 Total: 11.04 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -0.46 Total: -23.09 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.31 Total: -41.55 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.88 -6.85 -34.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085844168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.928 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds