Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 111.00240 * 2 1 4 4 H 1.08999 * 109.46940 * 34.34069 * 3 2 1 5 5 C 1.50703 * 109.46990 * 154.33830 * 3 2 1 6 6 C 1.41169 * 126.24780 * 39.68802 * 5 3 2 7 7 C 1.34801 * 107.51147 * 179.82582 * 6 5 3 8 8 N 1.36855 * 108.18116 * 0.43841 * 7 6 5 9 9 C 1.37498 * 125.68817 * 179.70070 * 8 7 6 10 10 H 1.08005 * 119.99262 * 198.33683 * 9 8 7 11 11 C 1.38915 * 120.00331 * 18.33922 * 9 8 7 12 12 N 1.31350 * 120.00155 * 10.70860 * 11 9 8 13 13 Si 1.86800 * 119.99801 * 190.70948 * 11 9 8 14 14 H 1.48506 * 109.47147 * 89.99748 * 13 11 9 15 15 H 1.48499 * 109.47232 * 209.99647 * 13 11 9 16 16 H 1.48498 * 109.47317 * 329.99769 * 13 11 9 17 17 C 1.34808 * 126.24713 * 220.00010 * 5 3 2 18 18 C 1.52998 * 109.47127 * 274.33901 * 3 2 1 19 19 C 1.52998 * 109.46974 * 173.96683 * 18 3 2 20 20 C 1.52994 * 109.47124 * 293.96539 * 18 3 2 21 21 H 1.08992 * 109.47466 * 184.70593 * 1 2 3 22 22 H 1.09007 * 109.46913 * 304.71292 * 1 2 3 23 23 H 1.09002 * 109.46853 * 64.70769 * 1 2 3 24 24 H 1.00896 * 110.99993 * 236.04142 * 2 1 3 25 25 H 1.08001 * 126.24366 * 0.02562 * 6 5 3 26 26 H 1.07997 * 125.91226 * 180.13552 * 7 6 5 27 27 H 0.96998 * 119.99874 * 180.02562 * 12 11 9 28 28 H 1.08002 * 125.90203 * 0.02562 * 17 5 3 29 29 H 1.08992 * 109.46980 * 53.97139 * 18 3 2 30 30 H 1.09000 * 109.47534 * 181.13035 * 19 18 3 31 31 H 1.09000 * 109.47360 * 301.13084 * 19 18 3 32 32 H 1.09001 * 109.47366 * 61.12516 * 19 18 3 33 33 H 1.08998 * 109.47066 * 53.50807 * 20 18 3 34 34 H 1.09003 * 109.47007 * 173.50880 * 20 18 3 35 35 H 1.09006 * 109.47501 * 293.50817 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3336 2.0147 0.5797 5 6 3.3712 1.3813 0.6153 6 6 4.3767 0.4085 0.4272 7 6 5.4507 0.7910 1.1465 8 7 5.1432 1.9630 1.7827 9 6 5.9799 2.6663 2.6169 10 1 5.5726 3.4006 3.2962 11 6 7.3489 2.4326 2.5859 12 7 7.8689 1.7025 1.6258 13 14 8.4502 3.1565 3.9097 14 1 8.5632 2.1981 5.0384 15 1 9.7985 3.4166 3.3444 16 1 7.8645 4.4304 4.3989 17 6 3.8641 2.3178 1.4504 18 6 2.0764 1.8866 -1.4383 19 6 2.4808 3.3622 -1.4295 20 6 3.1186 1.0769 -2.2122 21 1 -0.3634 -1.0241 0.0843 22 1 -0.3633 0.5853 0.8448 23 1 -0.3633 0.4391 -0.9292 24 1 1.8306 -0.5262 -0.7813 25 1 4.3007 -0.4785 -0.1842 26 1 6.3896 0.2614 1.2135 27 1 8.8248 1.5390 1.6044 28 1 3.3398 3.1959 1.7975 29 1 1.1036 1.7794 -1.9179 30 1 2.5189 3.7347 -2.4531 31 1 1.7489 3.9361 -0.8611 32 1 3.4626 3.4672 -0.9678 33 1 2.8938 0.0142 -2.1215 34 1 3.0952 1.3648 -3.2633 35 1 4.1095 1.2748 -1.8034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085844168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = 21.967004 kcal Electronic energy + Delta-G solvation = -15566.160838 eV Core-core repulsion = 13177.885811 eV Total energy + Delta-G solvation = -2388.275027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54389 -38.63764 -35.18831 -34.12596 -31.83941 -29.60982 -28.10991 -27.37978 -26.03206 -24.21628 -21.51857 -21.24446 -19.79523 -18.88597 -17.38815 -16.83449 -15.98965 -15.72428 -15.32667 -14.84341 -14.37832 -14.29123 -13.92483 -13.53180 -13.45687 -13.29751 -12.96755 -12.86155 -12.80687 -12.54350 -12.27054 -12.12223 -12.07829 -11.84338 -11.52369 -11.30846 -11.03803 -9.26821 -9.06573 -8.56832 -8.27147 -6.25946 1.32919 1.37082 1.51162 2.05198 2.18105 2.62039 3.11182 3.43247 3.68944 4.09099 4.15761 4.22989 4.58333 4.65729 4.76130 4.77976 4.82044 4.89659 5.01870 5.09685 5.10744 5.12627 5.19630 5.23599 5.27080 5.43670 5.49439 5.66355 5.81576 5.98875 6.10699 6.43746 6.68883 6.69930 6.91448 7.40214 7.80417 8.49226 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044481 B = 0.007170 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.327633 B = 3904.288149 C = 3980.801197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.698 5.698 3 C 0.180 3.820 4 H 0.065 0.935 5 C -0.159 4.159 6 C -0.229 4.229 7 C -0.040 4.040 8 N -0.279 5.279 9 C -0.382 4.382 10 H 0.106 0.894 11 C -0.001 4.001 12 N -0.879 5.879 13 Si 1.011 2.989 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.256 1.256 17 C -0.100 4.100 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.139 4.139 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.030 0.970 24 H 0.342 0.658 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.280 0.720 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 0.170 -4.377 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.329 5.329 3 C 0.070 3.930 4 H 0.083 0.917 5 C -0.167 4.167 6 C -0.253 4.253 7 C -0.178 4.178 8 N 0.062 4.938 9 C -0.509 4.509 10 H 0.123 0.877 11 C -0.206 4.206 12 N -0.511 5.511 13 Si 0.831 3.169 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.180 1.180 17 C -0.235 4.235 18 C -0.128 4.128 19 C -0.195 4.195 20 C -0.196 4.196 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.161 0.839 25 H 0.135 0.865 26 H 0.155 0.845 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.576 0.219 -3.526 9.275 hybrid contribution 0.727 0.502 -0.342 0.947 sum -7.849 0.720 -3.868 8.780 Atomic orbital electron populations 1.22248 0.87192 1.02342 1.00190 1.60444 1.08011 1.13983 1.50499 1.19670 0.91126 0.88692 0.93545 0.91707 1.18892 0.96126 0.97293 1.04380 1.20290 0.94319 1.02184 1.08549 1.21933 1.00548 0.91060 1.04214 1.40407 1.09538 1.14805 1.29064 1.20307 0.89229 1.22887 1.18475 0.87665 1.26519 0.98538 0.96553 0.99035 1.70055 1.14141 1.36524 1.30414 0.84693 0.76564 0.78874 0.76740 1.19177 1.19671 1.17994 1.21500 0.88705 1.03972 1.09297 1.21618 0.98906 0.95988 0.96282 1.21705 1.00929 0.95581 1.01278 1.21812 0.99272 0.99479 0.99077 0.90684 0.92357 0.95187 0.83851 0.86519 0.84537 0.91010 0.84492 0.90398 0.92135 0.92445 0.94714 0.92583 0.92368 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.53 127.69 1.34 2.05 16 2 N -0.70 -21.73 6.36 -518.52 -3.30 -25.02 16 3 C 0.18 6.19 2.25 44.17 0.10 6.29 16 4 H 0.06 2.21 7.71 -2.39 -0.02 2.19 16 5 C -0.16 -7.06 3.78 -19.93 -0.08 -7.14 16 6 C -0.23 -11.06 8.44 22.20 0.19 -10.87 16 7 C -0.04 -2.24 10.07 83.12 0.84 -1.40 16 8 N -0.28 -15.63 2.91 -350.08 -1.02 -16.65 16 9 C -0.38 -21.29 10.08 83.97 0.85 -20.44 16 10 H 0.11 5.54 7.85 -2.91 -0.02 5.52 16 11 C 0.00 -0.08 5.37 84.93 0.46 0.38 16 12 N -0.88 -48.91 10.79 21.65 0.23 -48.67 16 13 Si 1.01 40.59 29.56 68.60 2.03 42.61 16 14 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 16 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 17 C -0.10 -4.98 10.69 83.12 0.89 -4.09 16 18 C -0.11 -3.19 2.78 -10.80 -0.03 -3.22 16 19 C -0.14 -4.18 8.99 71.98 0.65 -3.53 16 20 C -0.14 -4.28 8.06 71.98 0.58 -3.69 16 21 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.40 7.94 -2.38 -0.02 1.38 16 23 H 0.03 0.61 7.50 -2.39 -0.02 0.60 16 24 H 0.34 9.99 6.62 -89.70 -0.59 9.40 16 25 H 0.12 5.18 7.97 -2.91 -0.02 5.16 16 26 H 0.14 8.01 6.29 -2.91 -0.02 8.00 16 27 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.14 6.26 8.06 -2.91 -0.02 6.24 16 29 H 0.08 1.95 7.46 -2.39 -0.02 1.93 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.03 1.30 6.98 -2.39 -0.02 1.29 16 33 H 0.06 1.59 6.28 -2.39 -0.01 1.58 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.60 6.27 -2.38 -0.01 1.58 16 Total: -1.00 -61.57 279.77 4.20 -57.37 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.47 Total: 36.04 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 5.78 Total: -45.68 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -4.08 Total: -90.34 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.57 4.20 -57.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085844168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.336 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds