Wall clock time and date at job start Mon Mar 30 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30986 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48500 * 109.47277 * 240.00414 * 3 2 1 5 5 H 1.48503 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46897 * 120.00031 * 3 2 1 7 7 C 1.39816 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.40145 * 120.00246 * 359.97438 * 7 2 1 10 10 N 1.35108 * 126.61265 * 359.97438 * 9 7 2 11 11 C 1.30470 * 109.83008 * 180.02562 * 10 9 7 12 12 N 1.35787 * 110.09734 * 359.97438 * 11 10 9 13 13 C 1.36861 * 133.95763 * 179.97438 * 12 11 10 14 14 C 1.35475 * 119.62779 * 180.02562 * 13 12 11 15 15 N 1.33278 * 121.32764 * 0.02562 * 14 13 12 16 16 C 1.32008 * 121.22647 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 120.16990 * 179.97438 * 16 15 14 18 18 C 1.37939 * 107.32321 * 0.02562 * 12 11 10 19 19 H 0.97003 * 120.00493 * 0.02562 * 1 2 3 20 20 H 1.07995 * 124.94580 * 180.02562 * 11 10 9 21 21 H 1.08005 * 120.18806 * 0.03130 * 13 12 11 22 22 H 1.08003 * 119.33782 * 179.71785 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 3.0975 1.6965 -1.2125 5 1 1.2788 2.7465 0.0006 6 1 3.0976 1.6964 1.2125 7 6 2.0089 -1.2109 -0.0005 8 1 3.0890 -1.2109 -0.0010 9 6 1.3082 -2.4246 -0.0005 10 7 -0.0339 -2.5802 0.0004 11 6 -0.3321 -3.8503 0.0006 12 7 0.8026 -4.5961 -0.0008 13 6 1.0554 -5.9412 -0.0007 14 6 2.3365 -6.3818 -0.0019 15 7 3.3621 -5.5307 -0.0025 16 6 3.1678 -4.2250 -0.0026 17 17 4.5239 -3.1412 -0.0027 18 6 1.8691 -3.7212 -0.0013 19 1 -0.4851 0.8400 -0.0004 20 1 -1.3353 -4.2502 0.0010 21 1 0.2382 -6.6474 0.0001 22 1 2.5306 -7.4443 0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089195473.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:38 Heat of formation + Delta-G solvation = 68.210048 kcal Electronic energy + Delta-G solvation = -12657.551061 eV Core-core repulsion = 10239.065253 eV Total energy + Delta-G solvation = -2418.485808 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.94497 -38.83673 -37.58221 -35.68174 -33.86379 -31.54509 -30.27997 -27.15892 -25.05723 -23.37343 -22.26276 -19.65610 -18.18853 -17.91598 -17.15608 -16.46540 -15.96866 -15.75341 -14.94773 -14.51399 -14.05527 -13.84964 -13.06824 -12.99087 -12.90056 -12.56858 -11.95220 -11.66235 -11.62308 -10.82092 -10.71091 -10.25252 -9.96849 -8.68787 -8.53349 -6.19472 -0.08367 0.66418 0.87823 1.43821 1.49641 1.55667 2.22256 2.31204 2.44785 2.76270 3.51463 3.89033 4.01154 4.09026 4.21317 4.72803 4.77469 5.08976 5.20973 5.44645 5.75329 6.23658 6.60368 6.66190 6.97260 7.13881 7.70504 8.39015 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.012131 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.364210 B = 2307.628583 C = 3141.150818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.027 3.973 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.430 4.430 8 H 0.103 0.897 9 C 0.217 3.783 10 N -0.509 5.509 11 C 0.188 3.812 12 N -0.403 5.403 13 C -0.039 4.039 14 C 0.036 3.964 15 N -0.584 5.584 16 C 0.291 3.709 17 Cl -0.021 7.021 18 C -0.229 4.229 19 H 0.286 0.714 20 H 0.235 0.765 21 H 0.199 0.801 22 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -4.669 0.003 4.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.194 4.194 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.121 0.879 9 C 0.087 3.913 10 N -0.232 5.232 11 C -0.092 4.092 12 N -0.086 5.086 13 C -0.158 4.158 14 C -0.100 4.100 15 N -0.303 5.303 16 C 0.111 3.889 17 Cl 0.007 6.993 18 C -0.333 4.333 19 H 0.096 0.904 20 H 0.251 0.749 21 H 0.216 0.784 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.175 -4.518 0.004 4.668 hybrid contribution 0.001 0.292 -0.001 0.292 sum 1.177 -4.226 0.003 4.387 Atomic orbital electron populations 1.70138 1.08718 1.30107 1.30142 1.26940 0.95732 1.04473 0.92293 0.85249 0.78821 0.75400 0.80408 1.18072 1.18917 1.18083 1.19349 0.95598 0.88970 1.42603 0.87949 1.18706 0.88244 0.90534 0.93770 1.70959 1.14324 1.14078 1.23799 1.26015 0.91921 0.86602 1.04671 1.42519 1.06939 1.05611 1.53551 1.22842 1.00626 0.83152 1.09178 1.22272 0.86229 1.00107 1.01377 1.67645 1.36052 1.00611 1.25971 1.20798 0.85318 0.89645 0.93116 1.98321 1.43731 1.61274 1.95981 1.19442 0.88374 0.92790 1.32699 0.90385 0.74900 0.78390 0.78567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.10 11.94 21.81 0.26 -39.84 14 2 C 0.03 1.36 5.49 85.20 0.47 1.83 14 3 Si 0.98 37.26 29.56 68.60 2.03 39.29 14 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 14 5 H -0.27 -9.46 7.11 99.48 0.71 -8.76 14 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 14 7 C -0.43 -22.85 9.02 23.12 0.21 -22.64 14 8 H 0.10 5.12 5.60 -2.91 -0.02 5.11 14 9 C 0.22 11.83 6.71 39.85 0.27 12.10 14 10 N -0.51 -26.95 9.42 -191.52 -1.80 -28.75 14 11 C 0.19 8.09 12.75 180.03 2.30 10.39 14 12 N -0.40 -17.43 2.97 -349.39 -1.04 -18.46 14 13 C -0.04 -1.33 11.08 83.27 0.92 -0.40 14 14 C 0.04 1.26 11.08 83.83 0.93 2.19 14 15 N -0.58 -24.89 10.45 -187.05 -1.95 -26.85 14 16 C 0.29 13.58 7.33 84.92 0.62 14.20 14 17 Cl -0.02 -0.90 26.68 -2.72 -0.07 -0.97 14 18 C -0.23 -11.48 6.73 39.19 0.26 -11.21 14 19 H 0.29 13.46 8.30 -92.71 -0.77 12.69 14 20 H 0.23 7.31 8.06 -2.91 -0.02 7.28 14 21 H 0.20 4.50 8.06 -2.91 -0.02 4.47 14 22 H 0.20 4.86 8.06 -2.91 -0.02 4.84 14 Total: -1.00 -65.64 220.59 4.66 -60.98 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.26 Total: 8.16 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.98 Total: 6.44 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.53 Total: -113.90 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -65.64 4.66 -60.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195473.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.191 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds