Wall clock time and date at job start Mon Mar 30 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48493 * 109.47398 * 270.00193 * 3 2 1 5 5 H 1.48508 * 109.46876 * 30.00275 * 3 2 1 6 6 H 1.48497 * 109.46906 * 149.99652 * 3 2 1 7 7 C 1.39717 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.41158 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.37689 * 122.86466 * 179.73339 * 9 7 2 11 11 S 1.70999 * 108.84039 * 180.27179 * 10 9 7 12 12 C 1.75896 * 90.80763 * 0.02562 * 11 10 9 13 13 C 1.50701 * 124.99322 * 180.02562 * 12 11 10 14 14 F 1.39901 * 109.46965 * 269.95516 * 13 12 11 15 15 F 1.39904 * 109.46918 * 29.95509 * 13 12 11 16 16 F 1.39896 * 109.47382 * 149.95341 * 13 12 11 17 17 N 1.28793 * 110.01613 * 359.97438 * 12 11 10 18 18 H 0.97001 * 120.00563 * 0.02562 * 1 2 3 19 19 H 1.08000 * 125.58487 * 0.24030 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0465 -1.4000 5 1 1.4415 2.6527 0.7001 6 1 3.5416 1.4402 0.7001 7 6 2.0088 -1.2100 -0.0005 8 1 3.0888 -1.2100 -0.0001 9 6 1.3031 -2.4325 -0.0005 10 6 1.9311 -3.6578 -0.0064 11 16 0.7429 -4.8874 -0.0120 12 6 -0.5391 -3.6830 -0.0069 13 6 -2.0143 -3.9911 -0.0079 14 9 -2.4712 -4.0800 -1.3271 15 9 -2.2370 -5.2078 0.6459 16 9 -2.7041 -2.9715 0.6568 17 7 -0.0318 -2.4992 -0.0010 18 1 -0.4851 0.8400 -0.0004 19 1 2.9994 -3.8164 -0.0079 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095635155.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:55 Heat of formation + Delta-G solvation = -131.678917 kcal Electronic energy + Delta-G solvation = -13080.297617 eV Core-core repulsion = 10081.038188 eV Total energy + Delta-G solvation = -2999.259429 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.997 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -51.21698 -48.75691 -48.68964 -39.99068 -35.29393 -32.07365 -28.40823 -27.68327 -23.91296 -21.53613 -20.36429 -19.61584 -18.86299 -18.71802 -17.18453 -16.68678 -15.69075 -15.54717 -15.17616 -15.15379 -14.87964 -14.85849 -14.82199 -14.23443 -13.51926 -13.39274 -12.92977 -12.67212 -12.31916 -11.70349 -11.28544 -10.33878 -10.26604 -9.60746 -8.54171 -6.50477 -0.12785 0.48305 1.34186 1.37605 1.42175 1.54412 1.58380 2.13046 2.21506 2.50007 3.19548 3.21729 3.41306 4.36530 4.94976 5.14350 5.23918 6.04523 6.36441 6.74884 7.28799 8.36491 Molecular weight = 223.00amu Principal moments of inertia in cm(-1) A = 0.039525 B = 0.010665 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.248563 B = 2624.892055 C = 3158.638247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.023 3.977 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.463 4.463 8 H 0.097 0.903 9 C 0.184 3.816 10 C -0.444 4.444 11 S 0.137 5.863 12 C -0.088 4.088 13 C 0.564 3.436 14 F -0.169 7.169 15 F -0.160 7.160 16 F -0.168 7.168 17 N -0.387 5.387 18 H 0.284 0.716 19 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -4.262 0.013 4.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.196 4.196 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.497 4.497 8 H 0.115 0.885 9 C 0.061 3.939 10 C -0.585 4.585 11 S 0.386 5.614 12 C -0.368 4.368 13 C 0.505 3.495 14 F -0.150 7.150 15 F -0.141 7.141 16 F -0.149 7.149 17 N -0.104 5.104 18 H 0.094 0.906 19 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.899 -4.748 0.016 5.114 hybrid contribution 0.533 1.467 -0.013 1.561 sum -1.365 -3.282 0.003 3.554 Atomic orbital electron populations 1.70173 1.08822 1.29919 1.32210 1.27009 0.95819 1.04934 0.91879 0.84993 0.78831 0.75121 0.79485 1.18667 1.19433 1.17643 1.19403 0.94935 0.88995 1.46332 0.88458 1.18415 0.84848 0.94881 0.95755 1.25927 1.03562 0.94604 1.34364 1.82241 0.96032 1.10135 1.72980 1.27955 0.98061 0.95306 1.15518 1.16889 0.84281 0.74281 0.74047 1.93200 1.90005 1.95950 1.35859 1.93203 1.95252 1.44449 1.81205 1.93207 1.80856 1.60126 1.80731 1.67180 1.13465 1.20537 1.09256 0.90616 0.81758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.70 11.69 21.79 0.25 -42.45 13 2 C 0.02 1.17 5.49 85.17 0.47 1.63 13 3 Si 1.00 37.87 29.56 68.60 2.03 39.90 13 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 13 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 13 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 13 7 C -0.46 -24.76 9.23 23.34 0.22 -24.54 13 8 H 0.10 4.83 7.84 -2.91 -0.02 4.81 13 9 C 0.18 10.00 6.47 39.45 0.26 10.26 13 10 C -0.44 -20.96 10.98 67.69 0.74 -20.21 13 11 S 0.14 5.57 22.87 -56.49 -1.29 4.28 13 12 C -0.09 -4.07 6.91 88.55 0.61 -3.46 13 13 C 0.56 22.69 3.56 71.24 0.25 22.94 13 14 F -0.17 -6.49 17.30 44.97 0.78 -5.71 13 15 F -0.16 -5.54 17.04 44.97 0.77 -4.77 13 16 F -0.17 -7.15 17.22 44.97 0.77 -6.38 13 17 N -0.39 -21.10 8.35 -180.35 -1.51 -22.60 13 18 H 0.28 13.97 8.30 -92.71 -0.77 13.20 13 19 H 0.16 7.08 8.06 -2.91 -0.02 7.05 13 Total: -1.00 -58.26 212.20 5.66 -52.60 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.30 Total: -1.48 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 2.55 Total: -13.39 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -1.25 Total: -65.05 kcal Atomic # 9 Polarization: -19.18 SS G_CDS: 2.32 Total: -16.86 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.29 Total: 4.28 kcal Total: -58.26 5.66 -52.60 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095635155.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.077 kcal (2) G-P(sol) polarization free energy of solvation -58.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds