Wall clock time and date at job start Mon Mar 30 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.46963 * 2 1 4 4 C 1.36349 * 125.63585 * 90.02777 * 3 2 1 5 5 C 1.50703 * 125.88601 * 359.97438 * 4 3 2 6 6 C 1.34849 * 108.22184 * 179.97438 * 4 3 2 7 7 C 1.40898 * 107.41488 * 359.97438 * 6 4 3 8 8 C 1.50699 * 126.28957 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.46959 * 145.02574 * 8 7 6 10 10 N 1.46899 * 109.47244 * 25.02695 * 8 7 6 11 11 C 1.50703 * 109.47227 * 265.02575 * 8 7 6 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99873 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 C 1.34845 * 107.41754 * 0.22930 * 7 6 4 20 20 C 1.50697 * 125.89236 * 179.75081 * 19 7 6 21 21 H 1.08996 * 109.47315 * 299.99422 * 1 2 3 22 22 H 1.09004 * 109.47328 * 60.00083 * 1 2 3 23 23 H 1.09005 * 109.47347 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46770 * 240.00210 * 2 1 3 25 25 H 1.08994 * 109.47271 * 120.00460 * 2 1 3 26 26 H 1.08995 * 109.47181 * 269.99931 * 5 4 3 27 27 H 1.08994 * 109.47236 * 30.00319 * 5 4 3 28 28 H 1.09002 * 109.46947 * 150.00132 * 5 4 3 29 29 H 1.07994 * 126.29641 * 180.02562 * 6 4 3 30 30 H 1.00903 * 110.99833 * 299.99603 * 10 8 7 31 31 H 1.00901 * 111.00152 * 63.94840 * 10 8 7 32 32 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.47778 * 90.01813 * 20 19 7 34 34 H 1.08994 * 109.47702 * 210.02130 * 20 19 7 35 35 H 1.09003 * 109.46997 * 330.01668 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2835 2.1300 1.1082 5 6 2.1245 1.6796 2.5375 6 6 2.7128 3.3429 0.7046 7 6 2.7130 3.3429 -0.7044 8 6 3.1178 4.4881 -1.5963 9 1 3.6050 4.0980 -2.4900 10 7 4.0490 5.3655 -0.8745 11 6 1.8939 5.2727 -1.9932 12 1 0.9203 4.9722 -1.6350 13 6 2.0170 6.3739 -2.8136 14 7 3.2025 6.7401 -3.2493 15 14 0.4998 7.3460 -3.3062 16 1 0.2577 8.4229 -2.3127 17 1 0.7112 7.9479 -4.6471 18 1 -0.6759 6.4397 -3.3502 19 6 2.2791 2.1316 -1.1080 20 6 2.1134 1.6838 -2.5374 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.1174 1.9139 2.8823 27 1 2.2889 0.6039 2.5999 28 1 2.8522 2.1953 3.1640 29 1 3.0037 4.1634 1.3438 30 1 3.6206 5.7402 -0.0413 31 1 4.9056 4.8801 -0.6536 32 1 3.2891 7.5146 -3.8268 33 1 3.0411 1.2301 -2.8860 34 1 1.3066 0.9534 -2.5981 35 1 1.8724 2.5440 -3.1620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104524922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:02 Heat of formation + Delta-G solvation = 16.310990 kcal Electronic energy + Delta-G solvation = -15518.109303 eV Core-core repulsion = 13129.589013 eV Total energy + Delta-G solvation = -2388.520290 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14717 -36.71701 -34.62521 -33.51581 -32.89511 -29.98826 -29.60099 -27.96978 -25.31026 -24.30478 -22.96583 -20.39176 -19.17420 -18.36967 -17.11003 -16.47001 -16.01143 -15.88313 -15.44385 -14.56613 -14.48180 -14.06026 -13.94306 -13.91302 -13.64266 -13.30721 -13.21693 -12.91953 -12.80028 -12.65540 -12.52916 -12.33845 -12.12779 -11.97366 -11.59551 -11.16480 -10.49888 -9.14943 -8.79021 -8.41990 -7.88153 -6.09990 1.41534 1.42613 1.45946 1.52900 2.21447 2.25796 2.54875 3.31544 3.87014 4.04676 4.18231 4.27829 4.36994 4.46834 4.56654 4.62166 4.65391 4.76723 4.80546 4.83970 4.96861 5.03959 5.10141 5.20655 5.26808 5.32200 5.65431 5.80604 5.89462 6.27021 6.39374 6.54731 6.76892 6.86110 7.21890 7.39500 7.61382 9.12945 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031774 B = 0.008375 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.000933 B = 3342.338808 C = 3613.966224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.443 5.443 4 C 0.006 3.994 5 C -0.070 4.070 6 C -0.228 4.228 7 C -0.185 4.185 8 C 0.292 3.708 9 H 0.000 1.000 10 N -0.817 5.817 11 C -0.526 4.526 12 H 0.034 0.966 13 C 0.032 3.968 14 N -0.884 5.884 15 Si 0.944 3.056 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.273 1.273 19 C -0.014 4.014 20 C -0.068 4.068 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.318 0.682 31 H 0.306 0.694 32 H 0.253 0.747 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 -15.215 8.463 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.121 5.121 4 C -0.106 4.106 5 C -0.127 4.127 6 C -0.254 4.254 7 C -0.193 4.193 8 C 0.182 3.818 9 H 0.018 0.982 10 N -0.342 5.342 11 C -0.565 4.565 12 H 0.053 0.947 13 C -0.171 4.171 14 N -0.521 5.521 15 Si 0.770 3.230 16 H -0.205 1.205 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.125 4.125 20 C -0.126 4.126 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.019 -14.998 7.661 17.314 hybrid contribution -0.672 0.425 0.257 0.836 sum -4.692 -14.573 7.918 17.236 Atomic orbital electron populations 1.22121 0.94096 1.03857 1.01935 1.22001 0.95804 0.79581 1.05237 1.44100 1.51530 1.12112 1.04353 1.20660 1.07465 0.92094 0.90332 1.20287 1.02962 1.02018 0.87421 1.20537 1.12678 0.97838 0.94299 1.20952 1.06707 0.96349 0.95300 1.17131 0.90094 0.85553 0.89069 0.98231 1.59093 1.06828 1.40571 1.27753 1.21102 0.92358 1.12886 1.30203 0.94741 1.25680 0.97740 0.97992 0.95675 1.70238 1.23435 1.25379 1.33072 0.85819 0.80711 0.79014 0.77493 1.20540 1.20684 1.19786 1.20235 1.09864 0.92636 0.89715 1.20134 1.01760 1.01263 0.89445 0.92740 0.93838 0.88086 0.88716 0.87388 0.90834 0.90104 0.89966 0.86356 0.87059 0.88418 0.93760 0.91311 0.90523 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 71.98 0.74 -2.38 16 2 C 0.09 1.99 6.22 86.38 0.54 2.53 16 3 N -0.44 -14.34 2.75 -495.56 -1.36 -15.70 16 4 C 0.01 0.21 6.89 41.08 0.28 0.50 16 5 C -0.07 -1.54 10.10 71.24 0.72 -0.83 16 6 C -0.23 -9.47 10.02 22.14 0.22 -9.24 16 7 C -0.18 -8.68 5.17 -19.99 -0.10 -8.79 16 8 C 0.29 15.96 2.61 43.42 0.11 16.08 16 9 H 0.00 -0.01 8.02 -2.39 -0.02 -0.03 16 10 N -0.82 -42.62 8.31 -174.95 -1.45 -44.08 16 11 C -0.53 -31.21 8.71 25.60 0.22 -30.99 16 12 H 0.03 2.09 7.74 -2.91 -0.02 2.07 16 13 C 0.03 1.86 5.39 84.65 0.46 2.32 16 14 N -0.88 -54.63 12.77 21.44 0.27 -54.35 16 15 Si 0.94 46.18 29.54 68.60 2.03 48.21 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 19 C -0.01 -0.57 6.89 41.08 0.28 -0.29 16 20 C -0.07 -2.44 9.57 71.24 0.68 -1.76 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.09 1.79 7.65 -2.38 -0.02 1.78 16 25 H 0.11 1.71 7.02 -2.39 -0.02 1.69 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.37 7.05 -2.39 -0.02 1.35 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 4.80 7.50 -2.91 -0.02 4.78 16 30 H 0.32 16.06 8.07 -89.69 -0.72 15.34 16 31 H 0.31 14.52 9.06 -89.69 -0.81 13.71 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.20 7.71 -2.39 -0.02 2.18 16 35 H 0.06 2.45 7.87 -2.39 -0.02 2.43 16 Total: -1.00 -71.55 291.33 3.18 -68.37 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.46 Total: 30.40 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.15 Total: -32.85 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -2.54 Total: -114.13 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -71.55 3.18 -68.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104524922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.678 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds