Wall clock time and date at job start Mon Mar 30 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30547 * 1 3 3 Si 1.86793 * 119.99668 * 2 1 4 4 H 1.48503 * 109.47356 * 239.99971 * 3 2 1 5 5 H 1.48498 * 109.47552 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47048 * 120.00439 * 3 2 1 7 7 C 1.40424 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99655 * 179.97438 * 7 2 1 9 9 C 1.39977 * 120.00352 * 359.97438 * 7 2 1 10 10 N 1.32370 * 125.13641 * 359.97438 * 9 7 2 11 11 C 1.34154 * 108.90721 * 180.02562 * 10 9 7 12 12 C 1.40417 * 133.54912 * 179.97438 * 11 10 9 13 13 C 1.36446 * 119.81079 * 180.02562 * 12 11 10 14 14 C 1.38944 * 120.65948 * 0.02562 * 13 12 11 15 15 C 1.38201 * 120.58472 * 359.97282 * 14 13 12 16 16 Cl 1.73605 * 120.10375 * 180.02562 * 15 14 13 17 17 C 1.38590 * 119.79308 * 0.02562 * 15 14 13 18 18 O 1.35094 * 125.13234 * 179.97438 * 9 7 2 19 19 H 0.96997 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.08955 * 0.02562 * 12 11 10 21 21 H 1.08002 * 119.67196 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.71077 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0931 1.6965 -1.2125 5 1 1.2744 2.7465 0.0006 6 1 3.0932 1.6964 1.2124 7 6 2.0076 -1.2161 -0.0005 8 1 3.0877 -1.2161 -0.0010 9 6 1.3077 -2.4284 -0.0005 10 7 -0.0106 -2.5470 0.0004 11 6 -0.3299 -3.8499 0.0007 12 6 -1.5486 -4.5474 0.0020 13 6 -1.5493 -5.9118 0.0024 14 6 -0.3545 -6.6210 0.0020 15 6 0.8574 -5.9568 0.0006 16 17 2.3428 -6.8553 -0.0005 17 6 0.8832 -4.5711 0.0002 18 8 1.8759 -3.6540 -0.0015 19 1 -0.4851 0.8400 0.0004 20 1 -2.4827 -4.0053 0.0027 21 1 -2.4880 -6.4460 0.0038 22 1 -0.3729 -7.7008 0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107316205.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:44 Heat of formation + Delta-G solvation = -7.044481 kcal Electronic energy + Delta-G solvation = -12439.862119 eV Core-core repulsion = 9985.820278 eV Total energy + Delta-G solvation = -2454.041840 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.29228 -38.74389 -37.32984 -36.11907 -34.42737 -31.29871 -30.88649 -28.23581 -23.99784 -23.29326 -22.39939 -19.57487 -18.68691 -17.96979 -17.09484 -16.91148 -16.09950 -15.44604 -14.92690 -14.44812 -13.88140 -13.60090 -13.25262 -13.04281 -12.78183 -12.68508 -12.23916 -12.05518 -11.97257 -11.75120 -11.08613 -10.43040 -9.60234 -9.18080 -8.79367 -6.95547 0.05570 0.51793 1.13901 1.37532 1.40862 1.55975 1.99470 2.05537 2.38018 2.81662 3.20857 3.83196 4.11588 4.29350 4.49988 4.51250 4.86955 5.03035 5.17037 5.38765 5.50918 5.70577 5.82432 6.04964 6.24223 6.47838 7.65796 8.14369 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.044762 B = 0.008503 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.382197 B = 3292.231199 C = 3907.772245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.025 3.975 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.431 4.431 8 H 0.114 0.886 9 C 0.320 3.680 10 N -0.583 5.583 11 C 0.071 3.929 12 C -0.141 4.141 13 C -0.076 4.076 14 C -0.154 4.154 15 C 0.003 3.997 16 Cl -0.075 7.075 17 C -0.098 4.098 18 O -0.263 6.263 19 H 0.297 0.703 20 H 0.131 0.869 21 H 0.177 0.823 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -4.970 0.005 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.199 4.199 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.183 1.183 6 H -0.175 1.175 7 C -0.465 4.465 8 H 0.132 0.868 9 C 0.141 3.859 10 N -0.317 5.317 11 C -0.052 4.052 12 C -0.163 4.163 13 C -0.095 4.095 14 C -0.174 4.174 15 C -0.024 4.024 16 Cl -0.047 7.047 17 C -0.150 4.150 18 O -0.164 6.164 19 H 0.108 0.892 20 H 0.149 0.851 21 H 0.194 0.806 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.780 -4.379 0.004 4.448 hybrid contribution 0.994 0.035 -0.001 0.994 sum 0.214 -4.344 0.004 4.349 Atomic orbital electron populations 1.70022 1.09530 1.31523 1.25726 1.27263 0.96014 1.04720 0.91935 0.84691 0.78228 0.72553 0.80819 1.17444 1.18321 1.17454 1.19133 0.96041 0.86264 1.45017 0.86826 1.23076 0.87231 0.83904 0.91710 1.71460 1.10944 1.13972 1.35296 1.20983 0.94788 0.90745 0.98637 1.20291 0.94417 0.94747 1.06800 1.20910 0.98940 0.91978 0.97627 1.20972 0.88348 1.01084 1.06991 1.19894 0.89022 0.85263 1.08267 1.98302 1.34902 1.74337 1.97135 1.20457 0.88589 0.91269 1.14652 1.84611 1.35723 1.16535 1.79501 0.89172 0.85150 0.80552 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.19 11.84 21.91 0.26 -38.93 14 2 C 0.03 1.22 5.50 85.42 0.47 1.69 14 3 Si 1.02 35.01 29.56 68.60 2.03 37.04 14 4 H -0.25 -8.19 7.11 99.48 0.71 -7.48 14 5 H -0.26 -8.27 7.11 99.48 0.71 -7.57 14 6 H -0.25 -8.20 7.11 99.48 0.71 -7.49 14 7 C -0.43 -23.23 9.46 23.22 0.22 -23.01 14 8 H 0.11 5.54 7.85 -2.91 -0.02 5.52 14 9 C 0.32 18.92 7.68 85.03 0.65 19.57 14 10 N -0.58 -34.84 9.37 -302.09 -2.83 -37.67 14 11 C 0.07 3.75 7.22 40.03 0.29 4.04 14 12 C -0.14 -5.91 10.07 22.38 0.23 -5.68 14 13 C -0.08 -2.41 9.96 22.02 0.22 -2.20 14 14 C -0.15 -5.07 9.82 22.43 0.22 -4.85 14 15 C 0.00 0.12 6.33 22.34 0.14 0.26 14 16 Cl -0.08 -2.74 28.96 -2.72 -0.08 -2.82 14 17 C -0.10 -5.03 7.22 23.06 0.17 -4.86 14 18 O -0.26 -14.95 10.83 -18.93 -0.21 -15.16 14 19 H 0.30 13.70 8.29 -92.71 -0.77 12.93 14 20 H 0.13 5.04 8.06 -2.91 -0.02 5.02 14 21 H 0.18 3.77 8.06 -2.91 -0.02 3.74 14 22 H 0.17 4.12 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -66.84 225.48 3.04 -63.80 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.26 Total: 8.77 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 2.61 Total: -15.04 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.57 Total: -76.60 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.21 Total: -15.16 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.08 Total: -2.82 kcal Total: -66.84 3.04 -63.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107316205.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.756 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds