Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47503 * 85.01474 * 3 2 1 5 5 H 1.48498 * 109.47244 * 205.01812 * 3 2 1 6 6 H 1.48502 * 109.46894 * 325.01741 * 3 2 1 7 7 C 1.39311 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 186.76274 * 7 2 1 9 9 N 1.37176 * 119.99529 * 6.76773 * 7 2 1 10 10 N 1.28746 * 123.57950 * 6.46488 * 9 7 2 11 11 C 1.32332 * 108.86603 * 179.88737 * 10 9 7 12 12 C 1.40562 * 136.49774 * 180.08120 * 11 10 9 13 13 C 1.35902 * 119.50929 * 180.30389 * 12 11 10 14 14 C 1.39688 * 121.71971 * 359.97438 * 13 12 11 15 15 Cl 1.73604 * 119.13853 * 180.02562 * 14 13 12 16 16 C 1.36022 * 121.71458 * 0.02562 * 14 13 12 17 17 C 1.40518 * 119.48892 * 359.96518 * 16 14 13 18 18 N 1.28744 * 123.58009 * 186.76261 * 9 7 2 19 19 H 0.96997 * 120.00209 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.24183 * 0.27694 * 12 11 10 21 21 H 1.07996 * 119.13670 * 180.02562 * 13 12 11 22 22 H 1.07997 * 120.25712 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3864 2.1074 1.3947 5 1 3.5905 1.4121 -0.5921 6 1 1.4982 2.6200 -0.8027 7 6 2.0069 -1.2064 0.0005 8 1 3.0812 -1.2096 0.1107 9 7 1.3282 -2.3903 -0.1389 10 7 0.0684 -2.4631 -0.3943 11 6 -0.2801 -3.7375 -0.4695 12 6 -1.4617 -4.4587 -0.7128 13 6 -1.4305 -5.8174 -0.7045 14 6 -0.2502 -6.5234 -0.4600 15 17 -0.2867 -8.2590 -0.4659 16 6 0.9269 -5.8863 -0.2176 17 6 0.9648 -4.4816 -0.2119 18 7 1.8821 -3.5467 -0.0229 19 1 -0.4850 0.8400 -0.0004 20 1 -2.3877 -3.9370 -0.9045 21 1 -2.3418 -6.3655 -0.8926 22 1 1.8256 -6.4556 -0.0318 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107839224.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = 113.042716 kcal Electronic energy + Delta-G solvation = -12381.609229 eV Core-core repulsion = 9965.067511 eV Total energy + Delta-G solvation = -2416.541717 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.86391 -37.26521 -35.59607 -33.96845 -31.68386 -30.56689 -29.08820 -26.45672 -23.11120 -21.89114 -19.90965 -18.30029 -17.25612 -15.75173 -15.18174 -15.13804 -14.83001 -13.76286 -13.30499 -12.52606 -12.25281 -12.12513 -11.71105 -11.54936 -11.31192 -10.79970 -10.61952 -10.51546 -9.81253 -9.52448 -9.41704 -9.10453 -8.07694 -7.19055 -7.12005 -5.00261 1.59337 2.45458 2.74265 2.78373 2.81701 2.90070 3.46677 3.63896 4.46536 4.59671 4.64032 5.04777 5.57245 5.93425 6.07340 6.30878 6.41555 6.55625 6.96916 7.05346 7.23548 7.30346 7.68226 7.69719 7.98780 8.75963 9.72295 9.98047 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.086592 B = 0.006748 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.278440 B = 4148.400323 C = 4454.991361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.045 3.955 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.254 1.254 6 H -0.268 1.268 7 C -0.273 4.273 8 H 0.141 0.859 9 N 0.118 4.882 10 N -0.303 5.303 11 C -0.019 4.019 12 C -0.055 4.055 13 C -0.142 4.142 14 C -0.046 4.046 15 Cl -0.102 7.102 16 C -0.070 4.070 17 C 0.003 3.997 18 N -0.397 5.397 19 H 0.290 0.710 20 H 0.122 0.878 21 H 0.121 0.879 22 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 -2.588 -0.621 2.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.177 1.177 6 H -0.193 1.193 7 C -0.418 4.418 8 H 0.158 0.842 9 N 0.234 4.766 10 N -0.153 5.153 11 C -0.159 4.159 12 C -0.078 4.078 13 C -0.164 4.164 14 C -0.077 4.077 15 Cl -0.074 7.074 16 C -0.093 4.093 17 C -0.137 4.137 18 N -0.247 5.247 19 H 0.101 0.899 20 H 0.140 0.860 21 H 0.139 0.861 22 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.227 -1.725 -0.510 1.813 hybrid contribution -0.210 -0.307 -0.044 0.374 sum -0.436 -2.032 -0.554 2.151 Atomic orbital electron populations 1.70106 1.06944 1.30103 1.27913 1.26055 0.95979 1.01464 0.94481 0.85439 0.79726 0.77464 0.79603 1.18782 1.17743 1.19274 1.20585 0.94066 0.78391 1.48775 0.84178 1.44258 1.02377 1.04769 1.25165 1.75316 0.96647 1.15788 1.27548 1.21895 0.96018 0.90693 1.07313 1.19434 0.95057 0.91957 1.01377 1.20014 0.96301 0.93316 1.06813 1.19817 0.95263 0.82188 1.10403 1.98286 1.98928 1.12582 1.97617 1.19154 0.96583 0.89884 1.03694 1.21097 0.91581 0.94301 1.06767 1.74467 1.25004 0.90922 1.34308 0.89898 0.85969 0.86133 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.84 11.78 55.51 0.65 -17.19 14 2 C 0.05 1.04 5.47 -17.50 -0.10 0.94 14 3 Si 0.96 16.42 29.56 -169.99 -5.02 11.40 14 4 H -0.26 -4.41 7.11 56.52 0.40 -4.01 14 5 H -0.25 -4.21 7.11 56.52 0.40 -3.81 14 6 H -0.27 -4.51 7.11 56.52 0.40 -4.11 14 7 C -0.27 -6.82 10.40 -14.76 -0.15 -6.97 14 8 H 0.14 3.15 7.84 -52.49 -0.41 2.74 14 9 N 0.12 3.27 4.01 31.64 0.13 3.39 14 10 N -0.30 -8.49 9.77 33.22 0.32 -8.16 14 11 C -0.02 -0.48 7.61 -83.09 -0.63 -1.12 14 12 C -0.06 -1.18 10.08 -39.54 -0.40 -1.58 14 13 C -0.14 -2.69 9.66 -39.88 -0.39 -3.07 14 14 C -0.05 -0.90 6.27 -39.84 -0.25 -1.15 14 15 Cl -0.10 -1.66 28.88 -51.86 -1.50 -3.16 14 16 C -0.07 -1.50 9.80 -39.52 -0.39 -1.89 14 17 C 0.00 0.07 7.61 -83.10 -0.63 -0.56 14 18 N -0.40 -10.76 11.95 33.21 0.40 -10.37 14 19 H 0.29 6.28 8.30 -40.82 -0.34 5.94 14 20 H 0.12 2.33 8.06 -52.49 -0.42 1.91 14 21 H 0.12 1.90 8.06 -52.49 -0.42 1.48 14 22 H 0.12 2.38 8.06 -52.49 -0.42 1.96 14 LS Contribution 224.47 15.07 3.38 3.38 Total: -1.00 -28.62 224.47 -5.39 -34.01 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -0.81 Total: 2.10 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.93 Total: -15.40 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 1.50 Total: -32.33 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.02 Total: 11.40 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.50 Total: -3.16 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.62 -5.39 -34.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107839224.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.049 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds