Wall clock time and date at job start Mon Mar 30 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47029 * 2 1 4 4 C 1.39863 * 125.90188 * 125.23408 * 3 2 1 5 5 C 1.35321 * 107.92283 * 180.14374 * 4 3 2 6 6 C 1.50697 * 126.12691 * 179.90746 * 5 4 3 7 7 C 1.52997 * 109.47466 * 84.68821 * 6 5 4 8 8 N 1.34941 * 107.74441 * 359.64205 * 5 4 3 9 9 C 1.46503 * 126.03861 * 180.20679 * 8 5 4 10 10 C 1.52999 * 109.47054 * 89.99910 * 9 8 5 11 11 C 1.50698 * 109.46953 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00302 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99974 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47161 * 90.00705 * 15 13 11 17 17 H 1.48503 * 109.47129 * 210.00247 * 15 13 11 18 18 H 1.48503 * 109.47300 * 330.00243 * 15 13 11 19 19 N 1.30842 * 125.89629 * 304.98012 * 3 2 1 20 20 H 1.09006 * 109.46788 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47313 * 299.99717 * 1 2 3 22 22 H 1.08997 * 109.47432 * 60.00438 * 1 2 3 23 23 H 1.08996 * 109.47313 * 240.00283 * 2 1 3 24 24 H 1.08997 * 109.47432 * 119.99562 * 2 1 3 25 25 H 1.08004 * 126.04250 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.47120 * 324.68574 * 6 5 4 27 27 H 1.08998 * 109.46862 * 204.69376 * 6 5 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 29 29 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 30 30 H 1.09004 * 109.47261 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46998 * 209.99882 * 9 8 5 32 32 H 1.09004 * 109.46880 * 329.99961 * 9 8 5 33 33 H 1.08998 * 109.47323 * 300.00363 * 10 9 8 34 34 H 1.09004 * 109.47236 * 60.00269 * 10 9 8 35 35 H 0.97000 * 119.99968 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9219 1.9762 0.9254 5 6 3.1212 3.2710 0.5861 6 6 4.0063 4.2529 1.3095 7 6 5.4461 4.1030 0.8141 8 7 2.3901 3.5236 -0.5196 9 6 2.3150 4.8029 -1.2296 10 6 3.4034 4.8548 -2.3036 11 6 3.3266 6.1710 -3.0335 12 1 2.5767 6.8980 -2.7585 13 6 4.2143 6.4475 -4.0516 14 7 5.1278 5.5624 -4.3862 15 14 4.1195 8.0793 -4.9558 16 1 4.9803 9.0761 -4.2699 17 1 4.5882 7.8989 -6.3533 18 1 2.7145 8.5603 -4.9632 19 7 1.7151 2.3466 -0.8684 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.3692 1.4630 1.7639 26 1 3.9682 4.0555 2.3809 27 1 3.6587 5.2674 1.1146 28 1 5.4841 4.3004 -0.2572 29 1 5.7936 3.0884 1.0092 30 1 6.0862 4.8136 1.3372 31 1 1.3363 4.9009 -1.6991 32 1 2.4626 5.6197 -0.5230 33 1 4.3822 4.7566 -1.8341 34 1 3.2559 4.0379 -3.0102 35 1 5.7520 5.7569 -5.1027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132491163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:27 Heat of formation + Delta-G solvation = 41.343056 kcal Electronic energy + Delta-G solvation = -15045.969549 eV Core-core repulsion = 12658.534731 eV Total energy + Delta-G solvation = -2387.434818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77690 -35.06856 -33.63704 -32.94176 -31.63663 -28.56614 -28.44147 -25.14784 -23.33515 -23.28852 -21.25868 -19.70807 -18.33675 -16.73715 -15.68764 -14.83005 -14.49831 -14.41334 -14.18525 -13.66917 -13.25948 -13.00703 -12.69287 -12.38827 -12.28756 -11.76346 -11.49446 -11.26000 -11.21136 -11.01907 -10.90251 -10.73567 -10.69777 -10.08247 -9.90414 -9.86232 -9.33359 -8.47910 -8.44246 -7.87955 -6.11597 -4.16852 2.47805 3.17758 3.25543 3.25758 3.32843 3.36180 4.37170 4.91757 5.01169 5.22698 5.24371 5.34767 5.47268 5.55496 5.59729 5.82168 5.84239 5.97863 6.07061 6.08347 6.13808 6.16515 6.23036 6.35963 6.41408 6.52100 6.58921 6.73960 7.20594 7.47581 7.56985 7.67648 7.89781 8.20950 8.38152 8.88840 9.47950 10.99502 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.006744 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.934782 B = 4150.599402 C = 4649.164214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C 0.057 3.943 4 C -0.287 4.287 5 C 0.090 3.910 6 C -0.059 4.059 7 C -0.149 4.149 8 N -0.346 5.346 9 C 0.129 3.871 10 C 0.013 3.987 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 N -0.294 5.294 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.136 0.864 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -6.053 11.256 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.108 4.108 4 C -0.317 4.317 5 C -0.040 4.040 6 C -0.098 4.098 7 C -0.206 4.206 8 N -0.126 5.126 9 C 0.009 3.991 10 C -0.024 4.024 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.116 5.116 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.154 0.846 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.983 -5.656 9.993 12.154 hybrid contribution 0.587 0.741 0.089 0.949 sum -3.395 -4.915 10.082 11.719 Atomic orbital electron populations 1.21694 0.94925 1.01110 1.02461 1.19853 0.95883 0.89368 1.02497 1.22103 0.98226 0.96156 0.94361 1.20914 1.10061 0.94228 1.06471 1.21047 0.96231 0.96300 0.90439 1.20159 0.94027 0.96992 0.98594 1.21782 0.94245 1.01591 1.03025 1.49060 1.33331 1.10114 1.20127 1.22227 1.03290 0.78050 0.95513 1.19479 0.92511 0.98089 0.92356 1.21006 1.16565 1.01197 1.17823 0.92302 1.24995 0.95138 0.97098 0.96842 1.69977 1.18385 1.34588 1.29800 0.86516 0.78438 0.83561 0.79047 1.20514 1.21096 1.19735 1.77255 1.19920 0.91692 1.22782 0.92723 0.92927 0.92060 0.90740 0.90632 0.84627 0.90121 0.90648 0.91184 0.92618 0.92256 0.89994 0.90192 0.95728 0.95643 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.87 37.16 0.37 -1.40 16 2 C -0.04 -0.49 6.51 -27.88 -0.18 -0.68 16 3 C 0.06 1.00 6.49 -82.41 -0.53 0.47 16 4 C -0.29 -4.87 10.64 -40.01 -0.43 -5.29 16 5 C 0.09 1.62 6.19 -82.27 -0.51 1.11 16 6 C -0.06 -0.87 6.22 -27.89 -0.17 -1.04 16 7 C -0.15 -2.23 9.89 37.16 0.37 -1.86 16 8 N -0.35 -7.16 3.61 -57.14 -0.21 -7.37 16 9 C 0.13 2.75 6.18 -4.04 -0.02 2.73 16 10 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 11 C -0.53 -14.49 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 N -0.29 -6.16 12.54 33.67 0.42 -5.73 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 25 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.07 1.30 6.55 -51.93 -0.34 0.96 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.08 1.54 6.98 -51.93 -0.36 1.17 16 33 H 0.02 0.67 6.55 -51.93 -0.34 0.33 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -31.07 294.68 -6.89 -37.96 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.59 Total: -0.84 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.67 Total: -18.93 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.95 Total: -38.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.07 -6.89 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132491163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.308 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds