Wall clock time and date at job start Mon Mar 30 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47029 * 2 1 4 4 C 1.39863 * 125.90188 * 125.23408 * 3 2 1 5 5 C 1.35321 * 107.92283 * 180.14374 * 4 3 2 6 6 C 1.50697 * 126.12691 * 179.90746 * 5 4 3 7 7 C 1.52997 * 109.47466 * 84.68821 * 6 5 4 8 8 N 1.34941 * 107.74441 * 359.64205 * 5 4 3 9 9 C 1.46503 * 126.03861 * 180.20679 * 8 5 4 10 10 C 1.52999 * 109.47054 * 89.99910 * 9 8 5 11 11 C 1.50698 * 109.46953 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00302 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99974 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47161 * 90.00705 * 15 13 11 17 17 H 1.48503 * 109.47129 * 210.00247 * 15 13 11 18 18 H 1.48503 * 109.47300 * 330.00243 * 15 13 11 19 19 N 1.30842 * 125.89629 * 304.98012 * 3 2 1 20 20 H 1.09006 * 109.46788 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47313 * 299.99717 * 1 2 3 22 22 H 1.08997 * 109.47432 * 60.00438 * 1 2 3 23 23 H 1.08996 * 109.47313 * 240.00283 * 2 1 3 24 24 H 1.08997 * 109.47432 * 119.99562 * 2 1 3 25 25 H 1.08004 * 126.04250 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.47120 * 324.68574 * 6 5 4 27 27 H 1.08998 * 109.46862 * 204.69376 * 6 5 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 29 29 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 30 30 H 1.09004 * 109.47261 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46998 * 209.99882 * 9 8 5 32 32 H 1.09004 * 109.46880 * 329.99961 * 9 8 5 33 33 H 1.08998 * 109.47323 * 300.00363 * 10 9 8 34 34 H 1.09004 * 109.47236 * 60.00269 * 10 9 8 35 35 H 0.97000 * 119.99968 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9219 1.9762 0.9254 5 6 3.1212 3.2710 0.5861 6 6 4.0063 4.2529 1.3095 7 6 5.4461 4.1030 0.8141 8 7 2.3901 3.5236 -0.5196 9 6 2.3150 4.8029 -1.2296 10 6 3.4034 4.8548 -2.3036 11 6 3.3266 6.1710 -3.0335 12 1 2.5767 6.8980 -2.7585 13 6 4.2143 6.4475 -4.0516 14 7 5.1278 5.5624 -4.3862 15 14 4.1195 8.0793 -4.9558 16 1 4.9803 9.0761 -4.2699 17 1 4.5882 7.8989 -6.3533 18 1 2.7145 8.5603 -4.9632 19 7 1.7151 2.3466 -0.8684 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.3692 1.4630 1.7639 26 1 3.9682 4.0555 2.3809 27 1 3.6587 5.2674 1.1146 28 1 5.4841 4.3004 -0.2572 29 1 5.7936 3.0884 1.0092 30 1 6.0862 4.8136 1.3372 31 1 1.3363 4.9009 -1.6991 32 1 2.4626 5.6197 -0.5230 33 1 4.3822 4.7566 -1.8341 34 1 3.2559 4.0379 -3.0102 35 1 5.7520 5.7569 -5.1027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132491163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:27 Heat of formation + Delta-G solvation = 23.071850 kcal Electronic energy + Delta-G solvation = -15046.761848 eV Core-core repulsion = 12658.534731 eV Total energy + Delta-G solvation = -2388.227117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19108 -36.61493 -35.32212 -34.32854 -33.27913 -30.27969 -29.81383 -26.90450 -24.76981 -24.52602 -23.05673 -21.08629 -19.73227 -18.73344 -17.28648 -16.68152 -15.97913 -15.85386 -15.43307 -14.87036 -14.70487 -14.47614 -14.34904 -13.95562 -13.55405 -13.41441 -12.92194 -12.87118 -12.60777 -12.47356 -12.37929 -12.09642 -11.99679 -11.80898 -11.76715 -11.44300 -11.22552 -10.63505 -9.94917 -9.32225 -8.27283 -6.41442 1.04706 1.39165 1.41205 1.52265 1.72268 1.92667 2.38039 3.06861 3.67400 3.69775 4.03924 4.13667 4.28497 4.32704 4.45641 4.47303 4.61253 4.64564 4.73119 4.79044 4.87708 4.98030 5.01053 5.06962 5.19258 5.21061 5.34708 5.37460 5.45873 5.53855 5.68059 5.90519 6.02254 6.28763 6.74038 6.95623 7.29098 8.85016 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.006744 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.934782 B = 4150.599402 C = 4649.164214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C 0.056 3.944 4 C -0.288 4.288 5 C 0.080 3.920 6 C -0.057 4.057 7 C -0.143 4.143 8 N -0.371 5.371 9 C 0.145 3.855 10 C 0.027 3.973 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.261 1.261 19 N -0.345 5.345 20 H 0.084 0.916 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.171 0.829 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.004 0.996 34 H -0.022 1.022 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -5.817 13.073 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.109 4.109 4 C -0.317 4.317 5 C -0.049 4.049 6 C -0.095 4.095 7 C -0.201 4.201 8 N -0.152 5.152 9 C 0.024 3.976 10 C -0.011 4.011 11 C -0.583 4.583 12 H 0.090 0.910 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.796 3.204 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.185 1.185 19 N -0.167 5.167 20 H 0.102 0.898 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.126 0.874 25 H 0.188 0.812 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.022 0.978 34 H -0.004 1.004 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.213 -5.426 11.833 13.682 hybrid contribution 0.678 0.547 -0.425 0.970 sum -3.534 -4.879 11.408 12.901 Atomic orbital electron populations 1.21646 0.94085 1.02653 1.01244 1.20080 0.96611 0.86940 1.04076 1.22923 0.97338 0.97322 0.93313 1.21388 1.09444 0.93840 1.07072 1.21759 0.95809 0.97696 0.89626 1.20314 0.92781 0.96107 1.00343 1.21723 0.95251 1.02910 1.00169 1.48970 1.35081 1.09842 1.21338 1.21827 1.01006 0.79802 0.94922 1.19231 0.93222 0.96048 0.92578 1.21452 1.16783 1.01882 1.18134 0.90988 1.26016 0.94545 1.01159 0.97778 1.70131 1.19409 1.37037 1.30582 0.85331 0.79096 0.78584 0.77341 1.19198 1.21044 1.18468 1.77210 1.21978 0.92633 1.24909 0.89763 0.92913 0.94500 0.90680 0.87393 0.81187 0.86259 0.90868 0.95831 0.91692 0.89723 0.90475 0.87915 0.97775 1.00395 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.87 71.98 0.71 -2.46 16 2 C -0.04 -0.95 6.51 29.85 0.19 -0.76 16 3 C 0.06 1.96 6.49 43.10 0.28 2.24 16 4 C -0.29 -9.21 10.64 21.99 0.23 -8.98 16 5 C 0.08 2.80 6.19 41.41 0.26 3.06 16 6 C -0.06 -1.57 6.22 29.85 0.19 -1.38 16 7 C -0.14 -4.14 9.89 71.98 0.71 -3.43 16 8 N -0.37 -15.66 3.61 -334.70 -1.21 -16.87 16 9 C 0.14 6.37 6.18 86.38 0.53 6.90 16 10 C 0.03 1.48 5.30 29.85 0.16 1.63 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 12 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 15 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 N -0.34 -14.77 12.54 -47.39 -0.59 -15.37 16 20 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.11 1.99 8.12 -2.39 -0.02 1.97 16 25 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.05 6.95 -2.39 -0.02 2.03 16 28 H 0.02 0.88 6.55 -2.39 -0.02 0.87 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.98 16 31 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.10 3.96 6.98 -2.39 -0.02 3.94 16 33 H 0.00 0.23 6.55 -2.39 -0.02 0.21 16 34 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -70.08 294.68 5.51 -64.57 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.05 Total: 11.73 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.96 Total: -32.82 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.52 Total: -89.11 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.08 5.51 -64.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132491163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.641 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds