Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47031 * 2 1 4 4 C 1.39874 * 125.89920 * 125.28269 * 3 2 1 5 5 C 1.35313 * 107.91649 * 180.14064 * 4 3 2 6 6 C 1.50703 * 126.12522 * 179.90490 * 5 4 3 7 7 C 1.53000 * 109.46912 * 84.69179 * 6 5 4 8 8 N 1.34947 * 107.75007 * 359.64265 * 5 4 3 9 9 C 1.46495 * 126.03856 * 180.20692 * 8 5 4 10 10 H 1.09000 * 109.47750 * 359.97438 * 9 8 5 11 11 C 1.52999 * 109.47237 * 119.99974 * 9 8 5 12 12 C 1.50707 * 109.46876 * 239.99715 * 9 8 5 13 13 H 1.07994 * 119.99963 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99460 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00440 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99519 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47509 * 59.99416 * 16 14 12 18 18 H 1.48493 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47008 * 299.99784 * 16 14 12 20 20 N 1.30839 * 125.89484 * 305.02374 * 3 2 1 21 21 H 1.08998 * 109.47190 * 300.00207 * 1 2 3 22 22 H 1.08998 * 109.47253 * 60.00155 * 1 2 3 23 23 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47190 * 239.99793 * 2 1 3 25 25 H 1.09003 * 109.46946 * 119.99176 * 2 1 3 26 26 H 1.07993 * 126.04188 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47152 * 324.68951 * 6 5 4 28 28 H 1.09001 * 109.46980 * 204.69051 * 6 5 4 29 29 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 32 32 H 1.08998 * 109.47214 * 60.00005 * 11 9 8 33 33 H 1.08998 * 109.47367 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.47375 * 299.99762 * 11 9 8 35 35 H 0.96999 * 119.99629 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9227 1.9760 0.9249 5 6 3.1218 3.2707 0.5857 6 6 4.0074 4.2525 1.3088 7 6 5.4468 4.1027 0.8121 8 7 2.3898 3.5237 -0.5193 9 6 2.3142 4.8032 -1.2289 10 1 2.9459 5.5354 -0.7260 11 6 2.7958 4.6169 -2.6691 12 6 0.8882 5.2906 -1.2351 13 1 0.1156 4.7061 -0.7579 14 6 0.5700 6.4830 -1.8501 15 7 1.5109 7.1951 -2.4308 16 14 -1.1975 7.0876 -1.8572 17 1 -1.6643 7.2691 -0.4593 18 1 -1.2743 8.3838 -2.5776 19 1 -2.0591 6.0899 -2.5411 20 7 1.7145 2.3469 -0.8680 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.3706 1.4626 1.7628 27 1 3.9702 4.0549 2.3801 28 1 3.6597 5.2671 1.1143 29 1 6.0874 4.8125 1.3355 30 1 5.7945 3.0881 1.0067 31 1 5.4840 4.3003 -0.2591 32 1 2.1637 3.8849 -3.1717 33 1 2.7392 5.5687 -3.1971 34 1 3.8272 4.2643 -2.6647 35 1 1.2869 8.0337 -2.8637 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132492441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = 46.663310 kcal Electronic energy + Delta-G solvation = -15459.619385 eV Core-core repulsion = 13072.415270 eV Total energy + Delta-G solvation = -2387.204115 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42296 -34.98924 -33.77872 -32.65924 -31.06243 -28.22017 -27.82134 -25.32034 -23.75983 -23.16826 -21.01257 -19.43255 -18.04695 -16.50937 -15.71190 -14.53716 -14.30185 -14.17188 -13.88576 -13.36397 -13.08366 -12.85439 -12.55645 -12.24592 -11.73153 -11.50937 -11.31212 -11.12967 -10.99907 -10.90047 -10.76476 -10.65353 -10.60049 -10.30999 -10.19504 -9.57779 -9.24194 -8.57047 -8.10603 -7.54792 -6.21011 -4.27756 2.86909 3.25416 3.28800 3.33578 3.54832 3.67493 4.32107 5.09676 5.14081 5.31923 5.42356 5.48705 5.67061 5.69989 5.85965 5.97581 6.10571 6.13760 6.17543 6.31527 6.35626 6.44360 6.53228 6.60285 6.66619 6.77349 6.84330 7.00645 7.31596 7.48624 7.69048 7.78556 8.03149 8.20159 8.74847 8.85587 9.38306 10.84672 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.010060 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.123792 B = 2782.722175 C = 3601.648072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.032 4.032 3 C 0.037 3.963 4 C -0.294 4.294 5 C 0.076 3.924 6 C -0.061 4.061 7 C -0.142 4.142 8 N -0.319 5.319 9 C 0.277 3.723 10 H 0.060 0.940 11 C -0.145 4.145 12 C -0.520 4.520 13 H 0.065 0.935 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.906 3.094 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.274 1.274 20 N -0.278 5.278 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.012 0.988 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -7.338 5.594 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.324 4.324 5 C -0.055 4.055 6 C -0.100 4.100 7 C -0.200 4.200 8 N -0.099 5.099 9 C 0.178 3.822 10 H 0.078 0.922 11 C -0.204 4.204 12 C -0.559 4.559 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.531 5.531 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.102 5.102 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.031 0.969 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.284 -6.716 4.337 8.643 hybrid contribution -0.436 0.261 0.690 0.857 sum 2.848 -6.456 5.027 8.664 Atomic orbital electron populations 1.21694 0.95096 1.00705 1.02716 1.19770 0.95772 0.89745 1.01842 1.22056 0.98984 0.96166 0.95503 1.20813 1.10765 0.94426 1.06423 1.20977 0.97150 0.95864 0.91505 1.20133 0.93355 0.97753 0.98728 1.21698 0.95105 1.01554 1.01635 1.49497 1.30703 1.10182 1.19526 1.19267 0.98551 0.74792 0.89570 0.92221 1.22055 0.96260 1.03552 0.98503 1.21200 0.92492 1.05596 1.36581 0.91693 1.24880 0.98116 0.96103 0.94622 1.69841 1.32513 1.14515 1.36208 0.86417 0.84026 0.77878 0.78369 1.20114 1.21033 1.19975 1.77248 1.18400 0.91515 1.23031 0.92904 0.91958 0.93070 0.91286 0.91073 0.85311 0.90264 0.90258 0.92400 0.92600 0.92568 0.93817 0.88260 0.96887 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.87 37.16 0.37 -1.76 16 2 C -0.03 -0.49 6.51 -27.88 -0.18 -0.67 16 3 C 0.04 0.75 6.49 -82.40 -0.53 0.21 16 4 C -0.29 -5.61 10.64 -40.01 -0.43 -6.04 16 5 C 0.08 1.56 6.18 -82.26 -0.51 1.05 16 6 C -0.06 -1.01 6.11 -27.88 -0.17 -1.18 16 7 C -0.14 -2.04 9.89 37.16 0.37 -1.67 16 8 N -0.32 -7.58 3.26 -51.81 -0.17 -7.75 16 9 C 0.28 7.06 3.02 -69.08 -0.21 6.85 16 10 H 0.06 1.55 6.56 -51.93 -0.34 1.21 16 11 C -0.15 -3.61 9.23 37.16 0.34 -3.27 16 12 C -0.52 -14.49 8.77 -34.43 -0.30 -14.79 16 13 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 14 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 16 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 N -0.28 -6.60 12.39 33.67 0.42 -6.18 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 26 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.41 6.88 -51.93 -0.36 1.05 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 2.59 6.07 -51.93 -0.32 2.27 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -29.40 293.07 -6.71 -36.11 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.63 Total: 0.50 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.35 Total: -19.59 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.88 Total: -37.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.40 -6.71 -36.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132492441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.776 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds