Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47031 * 2 1 4 4 C 1.39874 * 125.89920 * 125.28269 * 3 2 1 5 5 C 1.35313 * 107.91649 * 180.14064 * 4 3 2 6 6 C 1.50703 * 126.12522 * 179.90490 * 5 4 3 7 7 C 1.53000 * 109.46912 * 84.69179 * 6 5 4 8 8 N 1.34947 * 107.75007 * 359.64265 * 5 4 3 9 9 C 1.46495 * 126.03856 * 180.20692 * 8 5 4 10 10 H 1.09000 * 109.47750 * 359.97438 * 9 8 5 11 11 C 1.52999 * 109.47237 * 119.99974 * 9 8 5 12 12 C 1.50707 * 109.46876 * 239.99715 * 9 8 5 13 13 H 1.07994 * 119.99963 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99460 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00440 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99519 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47509 * 59.99416 * 16 14 12 18 18 H 1.48493 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47008 * 299.99784 * 16 14 12 20 20 N 1.30839 * 125.89484 * 305.02374 * 3 2 1 21 21 H 1.08998 * 109.47190 * 300.00207 * 1 2 3 22 22 H 1.08998 * 109.47253 * 60.00155 * 1 2 3 23 23 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47190 * 239.99793 * 2 1 3 25 25 H 1.09003 * 109.46946 * 119.99176 * 2 1 3 26 26 H 1.07993 * 126.04188 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47152 * 324.68951 * 6 5 4 28 28 H 1.09001 * 109.46980 * 204.69051 * 6 5 4 29 29 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 32 32 H 1.08998 * 109.47214 * 60.00005 * 11 9 8 33 33 H 1.08998 * 109.47367 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.47375 * 299.99762 * 11 9 8 35 35 H 0.96999 * 119.99629 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9227 1.9760 0.9249 5 6 3.1218 3.2707 0.5857 6 6 4.0074 4.2525 1.3088 7 6 5.4468 4.1027 0.8121 8 7 2.3898 3.5237 -0.5193 9 6 2.3142 4.8032 -1.2289 10 1 2.9459 5.5354 -0.7260 11 6 2.7958 4.6169 -2.6691 12 6 0.8882 5.2906 -1.2351 13 1 0.1156 4.7061 -0.7579 14 6 0.5700 6.4830 -1.8501 15 7 1.5109 7.1951 -2.4308 16 14 -1.1975 7.0876 -1.8572 17 1 -1.6643 7.2691 -0.4593 18 1 -1.2743 8.3838 -2.5776 19 1 -2.0591 6.0899 -2.5411 20 7 1.7145 2.3469 -0.8680 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.3706 1.4626 1.7628 27 1 3.9702 4.0549 2.3801 28 1 3.6597 5.2671 1.1143 29 1 6.0874 4.8125 1.3355 30 1 5.7945 3.0881 1.0067 31 1 5.4840 4.3003 -0.2591 32 1 2.1637 3.8849 -3.1717 33 1 2.7392 5.5687 -3.1971 34 1 3.8272 4.2643 -2.6647 35 1 1.2869 8.0337 -2.8637 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132492441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = 30.307348 kcal Electronic energy + Delta-G solvation = -15460.328633 eV Core-core repulsion = 13072.415270 eV Total energy + Delta-G solvation = -2387.913362 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01839 -36.76976 -35.33197 -34.10108 -32.86882 -29.71994 -29.51296 -27.43119 -25.20911 -24.45897 -22.78995 -20.98336 -19.64552 -18.48609 -17.53188 -16.36117 -15.87223 -15.48040 -15.32219 -14.86542 -14.67600 -14.36855 -14.14272 -13.58298 -13.49450 -13.15796 -12.97093 -12.73544 -12.60167 -12.52001 -12.39085 -12.28915 -12.12579 -11.95716 -11.80913 -11.35536 -11.01985 -10.65279 -9.77669 -9.16856 -8.28847 -6.43751 1.26106 1.35460 1.37479 1.45977 1.99992 2.05643 2.34904 2.98803 3.77734 3.91590 4.12751 4.28460 4.40849 4.43715 4.51269 4.66786 4.71484 4.76009 4.82968 4.88218 4.94338 5.01563 5.05053 5.07671 5.21087 5.28218 5.34095 5.39505 5.47933 5.64485 5.68778 5.93230 6.13949 6.40386 6.69678 7.20723 7.26100 8.75392 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.010060 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.123792 B = 2782.722175 C = 3601.648072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C 0.038 3.962 4 C -0.293 4.293 5 C 0.064 3.936 6 C -0.060 4.060 7 C -0.135 4.135 8 N -0.347 5.347 9 C 0.284 3.716 10 H 0.050 0.950 11 C -0.130 4.130 12 C -0.542 4.542 13 H 0.041 0.959 14 C 0.027 3.973 15 N -0.908 5.908 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.278 1.278 20 N -0.332 5.332 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.166 0.834 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.026 0.974 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 -8.393 7.028 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.323 4.323 5 C -0.066 4.066 6 C -0.099 4.099 7 C -0.192 4.192 8 N -0.128 5.128 9 C 0.184 3.816 10 H 0.068 0.932 11 C -0.188 4.188 12 C -0.580 4.580 13 H 0.059 0.941 14 C -0.174 4.174 15 N -0.546 5.546 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.204 1.204 20 N -0.155 5.155 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.184 0.816 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.714 -7.775 5.778 10.375 hybrid contribution -0.534 0.509 0.296 0.795 sum 3.180 -7.266 6.074 9.990 Atomic orbital electron populations 1.21651 0.94858 1.02402 1.00847 1.19997 0.95927 0.87177 1.03969 1.22926 0.97937 0.97442 0.94352 1.21267 1.10135 0.93897 1.06955 1.21773 0.96790 0.97443 0.90563 1.20290 0.93843 0.95656 1.00137 1.21658 0.94020 1.03247 1.00307 1.49295 1.32654 1.09792 1.21051 1.18908 0.97055 0.75924 0.89718 0.93248 1.21849 0.96661 1.02075 0.98221 1.21283 0.93271 1.06115 1.37366 0.94098 1.25568 1.01773 0.95981 0.94031 1.69910 1.33949 1.14702 1.36057 0.85537 0.79519 0.77683 0.78495 1.19725 1.19480 1.20367 1.77192 1.20451 0.92387 1.25491 0.93725 0.94873 0.89543 0.90297 0.87642 0.81643 0.87211 0.92312 0.89657 0.91188 0.94949 0.95511 0.89729 0.95463 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.87 71.98 0.71 -3.19 16 2 C -0.03 -0.90 6.51 29.85 0.19 -0.70 16 3 C 0.04 1.49 6.49 43.10 0.28 1.77 16 4 C -0.29 -10.56 10.64 21.99 0.23 -10.32 16 5 C 0.06 2.58 6.18 41.41 0.26 2.84 16 6 C -0.06 -1.93 6.11 29.85 0.18 -1.74 16 7 C -0.13 -3.60 9.89 71.98 0.71 -2.89 16 8 N -0.35 -16.86 3.26 -317.84 -1.04 -17.89 16 9 C 0.28 14.98 3.02 44.25 0.13 15.11 16 10 H 0.05 2.67 6.56 -2.39 -0.02 2.65 16 11 C -0.13 -6.66 9.23 71.98 0.66 -5.99 16 12 C -0.54 -31.21 8.77 25.60 0.22 -30.98 16 13 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.03 1.51 5.30 84.66 0.45 1.96 16 15 N -0.91 -50.42 11.32 21.45 0.24 -50.18 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 N -0.33 -16.02 12.39 -47.38 -0.59 -16.60 16 21 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.11 2.26 8.12 -2.39 -0.02 2.24 16 26 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.06 2.10 6.88 -2.39 -0.02 2.09 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 4.55 6.07 -2.39 -0.01 4.54 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -65.04 293.07 5.73 -59.32 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.04 Total: 13.29 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 4.04 Total: -34.14 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.38 Total: -84.68 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.04 5.73 -59.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132492441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.623 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds