Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31000 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48500 * 109.46996 * 269.99777 * 3 2 1 5 5 H 1.48496 * 109.47115 * 29.99978 * 3 2 1 6 6 H 1.48496 * 109.46724 * 150.00304 * 3 2 1 7 7 C 1.39793 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.40985 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.38755 * 127.32263 * 0.02562 * 9 7 2 11 11 O 1.33944 * 109.34316 * 179.97438 * 10 9 7 12 12 C 1.34795 * 111.58338 * 0.02562 * 11 10 9 13 13 C 1.40448 * 108.02077 * 359.97438 * 12 11 10 14 14 C 1.39209 * 119.07038 * 180.02562 * 13 12 11 15 15 C 1.37995 * 118.63024 * 359.97438 * 14 13 12 16 16 N 1.32127 * 120.92436 * 0.02562 * 15 14 13 17 17 C 1.31877 * 122.52796 * 359.95402 * 16 15 14 18 18 Cl 1.73600 * 119.74582 * 180.02562 * 17 16 15 19 19 H 0.97000 * 120.00176 * 0.02562 * 1 2 3 20 20 H 1.08001 * 125.32570 * 0.23360 * 10 9 7 21 21 H 1.08000 * 120.68442 * 179.97438 * 14 13 12 22 22 H 1.07998 * 119.53406 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4914 2.0465 -1.4001 5 1 1.4414 2.6527 0.7000 6 1 3.5415 1.4402 0.7000 7 6 2.0090 -1.2106 -0.0005 8 1 3.0890 -1.2106 -0.0010 9 6 1.3041 -2.4316 -0.0016 10 6 -0.0721 -2.6086 -0.0028 11 8 -0.3510 -3.9187 -0.0041 12 6 0.7717 -4.6646 -0.0034 13 6 1.8727 -3.7926 -0.0021 14 6 3.1584 -4.3265 -0.0017 15 6 3.3045 -5.6987 -0.0021 16 7 2.2494 -6.4939 -0.0034 17 6 1.0138 -6.0328 -0.0034 18 17 -0.3202 -7.1437 -0.0045 19 1 -0.4850 0.8400 -0.0004 20 1 -0.8039 -1.8142 -0.0066 21 1 4.0236 -3.6801 -0.0010 22 1 4.2953 -6.1286 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140171820.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = -1.521500 kcal Electronic energy + Delta-G solvation = -12441.996661 eV Core-core repulsion = 9988.194315 eV Total energy + Delta-G solvation = -2453.802346 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.88409 -39.76349 -37.61618 -36.08175 -33.59379 -31.35232 -30.85700 -27.56252 -24.76009 -23.71223 -22.13670 -19.57318 -18.41267 -17.86958 -16.89439 -16.87632 -16.43247 -15.62075 -15.33728 -14.67034 -14.43166 -13.54282 -13.08052 -13.06050 -12.81727 -12.75569 -12.31819 -12.03973 -11.83945 -11.65502 -10.84507 -10.82550 -9.67938 -9.20229 -8.68043 -6.40912 -0.19207 0.29303 0.78283 1.32353 1.42198 1.56308 1.93645 2.13230 2.27727 2.66901 3.27545 3.63314 3.78460 4.03829 4.18769 4.44301 4.89393 4.99952 5.17801 5.33556 5.62984 5.78665 6.23209 6.45470 6.71745 6.81224 6.94430 8.34251 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.050523 B = 0.008279 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.065429 B = 3381.110149 C = 3925.334261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.014 3.986 3 Si 1.003 2.997 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.445 4.445 8 H 0.087 0.913 9 C -0.020 4.020 10 C -0.177 4.177 11 O -0.200 6.200 12 C -0.010 4.010 13 C -0.127 4.127 14 C -0.107 4.107 15 C 0.061 3.939 16 N -0.466 5.466 17 C 0.166 3.834 18 Cl -0.031 7.031 19 H 0.292 0.708 20 H 0.223 0.777 21 H 0.161 0.839 22 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 -3.442 0.003 5.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.196 4.196 3 Si 0.823 3.177 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.475 4.475 8 H 0.106 0.894 9 C -0.023 4.023 10 C -0.244 4.244 11 O -0.101 6.101 12 C -0.063 4.063 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.090 4.090 16 N -0.179 5.179 17 C -0.004 4.004 18 Cl -0.003 7.003 19 H 0.103 0.897 20 H 0.239 0.761 21 H 0.178 0.822 22 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.133 -4.357 0.006 6.006 hybrid contribution -0.308 1.553 -0.013 1.583 sum 3.825 -2.804 -0.007 4.743 Atomic orbital electron populations 1.69303 1.08892 1.30571 1.38629 1.26772 0.95779 1.04680 0.92347 0.84855 0.78612 0.74909 0.79314 1.18902 1.19434 1.17975 1.19136 0.94971 0.89233 1.44192 0.89438 1.19124 0.91866 0.90675 1.00647 1.25742 0.98402 0.79065 1.21217 1.83687 1.31169 1.19019 1.76190 1.20375 0.87322 0.92483 1.06134 1.20736 0.94432 0.94595 1.03747 1.21874 0.95849 0.96763 0.98156 1.22931 0.97273 0.88837 0.99971 1.66930 0.96758 1.40044 1.14127 1.20314 0.89911 0.83230 1.06915 1.98339 1.42217 1.62917 1.96804 0.89701 0.76102 0.82152 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.94 10.38 21.81 0.23 -41.71 14 2 C 0.01 0.69 5.49 85.19 0.47 1.16 14 3 Si 1.00 36.22 29.56 68.60 2.03 38.25 14 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 5 H -0.27 -9.37 7.11 99.48 0.71 -8.67 14 6 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 7 C -0.45 -22.70 9.44 23.32 0.22 -22.48 14 8 H 0.09 4.13 7.84 -2.91 -0.02 4.11 14 9 C -0.02 -1.08 6.12 -20.04 -0.12 -1.21 14 10 C -0.18 -9.52 11.08 67.94 0.75 -8.77 14 11 O -0.20 -10.31 10.51 -3.95 -0.04 -10.35 14 12 C -0.01 -0.46 7.19 22.98 0.17 -0.29 14 13 C -0.13 -6.02 6.42 -20.06 -0.13 -6.15 14 14 C -0.11 -3.97 10.16 22.45 0.23 -3.74 14 15 C 0.06 1.99 11.18 84.59 0.95 2.93 14 16 N -0.47 -17.56 10.30 -186.29 -1.92 -19.48 14 17 C 0.17 6.92 7.30 84.85 0.62 7.54 14 18 Cl -0.03 -1.13 29.12 -2.72 -0.08 -1.21 14 19 H 0.29 13.05 8.30 -92.71 -0.77 12.28 14 20 H 0.22 12.03 5.73 -2.91 -0.02 12.01 14 21 H 0.16 5.00 8.06 -2.91 -0.02 4.97 14 22 H 0.21 4.51 8.06 -2.91 -0.02 4.49 14 Total: -1.00 -57.68 223.56 4.63 -53.05 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.26 Total: 12.46 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 3.15 Total: -31.01 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.69 Total: -61.19 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.04 Total: -10.35 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -57.68 4.63 -53.05 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140171820.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.526 kcal (2) G-P(sol) polarization free energy of solvation -57.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds