Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 86.09206 * 3 2 1 5 5 C 1.53001 * 109.47570 * 288.88271 * 4 3 2 6 6 N 1.46899 * 109.47218 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99712 * 170.00213 * 6 5 4 8 8 C 1.53237 * 109.33805 * 172.74361 * 7 6 5 9 9 N 1.47079 * 108.52132 * 53.83315 * 8 7 6 10 10 C 1.36941 * 120.88448 * 128.78817 * 9 8 7 11 11 H 1.07997 * 119.99918 * 206.58402 * 10 9 8 12 12 C 1.38807 * 119.99583 * 26.58782 * 10 9 8 13 13 N 1.31618 * 120.00188 * 17.02141 * 12 10 9 14 14 Si 1.86799 * 119.99686 * 197.01988 * 12 10 9 15 15 H 1.48497 * 109.47556 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47149 * 120.00406 * 14 12 10 17 17 H 1.48503 * 109.47120 * 239.99923 * 14 12 10 18 18 C 1.47083 * 118.23330 * 308.81493 * 9 8 7 19 19 C 1.46891 * 110.99901 * 45.70069 * 6 5 4 20 20 H 1.09008 * 109.47001 * 165.01721 * 1 2 3 21 21 H 1.08996 * 109.47250 * 285.02236 * 1 2 3 22 22 H 1.09002 * 109.47169 * 45.02431 * 1 2 3 23 23 H 1.09008 * 109.47038 * 168.88774 * 4 3 2 24 24 H 1.08994 * 109.47405 * 48.88859 * 4 3 2 25 25 H 1.09008 * 109.46529 * 60.00191 * 5 4 3 26 26 H 1.08994 * 109.47237 * 300.00691 * 5 4 3 27 27 H 1.09004 * 109.49329 * 52.78786 * 7 6 5 28 28 H 1.08999 * 109.49244 * 292.70731 * 7 6 5 29 29 H 1.09002 * 109.62613 * 173.53722 * 8 7 6 30 30 H 1.08998 * 109.63440 * 293.92450 * 8 7 6 31 31 H 0.97006 * 119.99914 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.62421 * 170.89529 * 18 9 8 33 33 H 1.09004 * 109.62775 * 291.46820 * 18 9 8 34 34 H 1.09002 * 109.49547 * 67.29328 * 19 6 5 35 35 H 1.08995 * 109.52035 * 307.22723 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0011 -0.0007 5 6 4.6289 -0.4655 1.3640 6 7 6.0979 -0.4642 1.3634 7 6 6.6249 -0.6758 2.7182 8 6 8.1459 -0.8488 2.6497 9 7 8.7153 0.3029 1.9337 10 6 9.7496 1.0227 2.4700 11 1 9.8825 2.0599 2.2004 12 6 10.6270 0.4189 3.3602 13 7 10.6858 -0.8936 3.4382 14 14 11.7245 1.4693 4.4472 15 1 11.4678 2.9053 4.1694 16 1 11.4297 1.1812 5.8738 17 1 13.1481 1.1564 4.1630 18 6 8.1440 0.6615 0.6267 19 6 6.6230 0.7749 0.7748 20 1 -0.3633 -0.9928 -0.2657 21 1 -0.3633 0.2664 0.9925 22 1 -0.3633 0.7264 -0.7270 23 1 4.4808 1.0098 -0.1989 24 1 4.4812 -0.6744 -0.7750 25 1 4.2660 -1.4741 1.5622 26 1 4.2656 0.2100 2.1383 27 1 6.1760 -1.5716 3.1474 28 1 6.3844 0.1860 3.3407 29 1 8.5554 -0.8913 3.6590 30 1 8.3863 -1.7694 2.1180 31 1 11.2993 -1.3155 4.0601 32 1 8.5522 1.6174 0.2985 33 1 8.3842 -0.1122 -0.1026 34 1 6.3826 1.6166 1.4244 35 1 6.1728 0.9319 -0.2053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158880498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = 55.001187 kcal Electronic energy + Delta-G solvation = -14922.635541 eV Core-core repulsion = 12535.792984 eV Total energy + Delta-G solvation = -2386.842557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89786 -36.89808 -35.25814 -33.46677 -32.26050 -31.24964 -28.91903 -27.34550 -25.30041 -24.18096 -22.74460 -20.79501 -18.79000 -17.68434 -16.95256 -16.21258 -16.16037 -15.66102 -15.30337 -15.24323 -15.05456 -14.50345 -14.38931 -14.03357 -13.86683 -13.26316 -13.13902 -12.99530 -12.62876 -12.40513 -12.28183 -12.06694 -11.92613 -11.58753 -11.44503 -10.65492 -10.59657 -10.55200 -9.29299 -8.68952 -7.88101 -5.32902 1.46030 1.47494 1.58507 1.71185 1.77793 2.50514 2.92314 3.27089 3.48428 3.68058 4.05402 4.14534 4.30806 4.34354 4.48546 4.58396 4.62755 4.69038 4.81083 4.81970 4.84781 4.88035 4.99314 5.02025 5.02726 5.15996 5.20793 5.36665 5.60885 5.67186 6.14553 6.21768 6.37006 6.71918 7.12643 7.83308 8.37756 9.19004 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.068330 B = 0.005024 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.675509 B = 5572.361765 C = 5645.950537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.202 4.202 3 C -0.216 4.216 4 C -0.003 4.003 5 C 0.067 3.933 6 N -0.541 5.541 7 C 0.051 3.949 8 C 0.186 3.814 9 N -0.616 5.616 10 C -0.265 4.265 11 H 0.068 0.932 12 C -0.053 4.053 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.267 1.267 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.142 3.858 19 C 0.045 3.955 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.000 1.000 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 2.234 -5.456 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.203 4.203 3 C -0.217 4.217 4 C -0.040 4.040 5 C -0.060 4.060 6 N -0.266 5.266 7 C -0.079 4.079 8 C 0.060 3.940 9 N -0.340 5.340 10 C -0.395 4.395 11 H 0.086 0.914 12 C -0.248 4.248 13 N -0.582 5.582 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.017 3.983 19 C -0.083 4.083 20 H 0.112 0.888 21 H 0.109 0.891 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.632 1.775 -5.654 17.656 hybrid contribution 0.764 0.799 1.214 1.641 sum -15.868 2.573 -4.441 16.678 Atomic orbital electron populations 1.19087 0.82130 1.04313 1.04195 1.23382 0.95234 1.01220 1.00418 1.22670 0.94228 1.02198 1.02575 1.18753 0.83923 1.03345 0.97966 1.22019 0.86744 1.01165 0.96104 1.61990 1.06915 1.36414 1.21240 1.22590 0.97120 0.99542 0.88624 1.20607 0.88693 0.88132 0.96612 1.44434 1.37653 1.34171 1.17767 1.19588 1.04172 0.92904 1.22825 0.91392 1.25815 0.99194 0.96508 1.03258 1.70199 1.39934 1.09187 1.38887 0.85172 0.77961 0.78723 0.78365 1.19107 1.21604 1.21808 1.21169 0.91991 0.98116 0.87050 1.22658 0.96158 0.89643 0.99889 0.88828 0.89052 0.88725 0.88699 0.88268 0.90391 0.95464 0.90183 0.96250 0.92437 0.98189 0.94042 0.91977 0.96342 0.95952 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.54 10.32 70.18 0.72 0.19 16 2 C -0.20 -4.58 14.13 31.13 0.44 -4.14 16 3 C -0.22 -5.51 13.34 31.13 0.42 -5.10 16 4 C 0.00 -0.08 4.95 28.79 0.14 0.06 16 5 C 0.07 1.92 5.22 86.30 0.45 2.37 16 6 N -0.54 -19.10 4.78 -895.27 -4.28 -23.38 16 7 C 0.05 2.03 5.58 86.38 0.48 2.51 16 8 C 0.19 9.40 5.42 86.35 0.47 9.87 16 9 N -0.62 -32.30 3.04 -698.12 -2.12 -34.42 16 10 C -0.26 -14.97 9.63 84.03 0.81 -14.16 16 11 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 12 C -0.05 -2.99 4.93 84.86 0.42 -2.58 16 13 N -0.94 -56.45 11.15 21.65 0.24 -56.20 16 14 Si 0.97 45.48 29.59 68.60 2.03 47.51 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 18 C 0.14 6.10 6.69 86.35 0.58 6.68 16 19 C 0.05 1.58 5.04 86.38 0.44 2.01 16 20 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.10 2.19 6.18 -2.38 -0.01 2.17 16 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.08 2.15 8.14 -2.38 -0.02 2.14 16 26 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 3.24 6.12 -2.39 -0.01 3.23 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.06 2.53 7.95 -2.39 -0.02 2.51 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 2.88 5.73 -2.39 -0.01 2.87 16 Total: -1.00 -66.47 286.78 2.29 -64.18 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.05 Total: 4.60 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.36 Total: -2.28 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -6.16 Total: -114.01 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.47 2.29 -64.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158880498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.185 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds