Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47098 * 49.74283 * 3 2 1 5 5 C 1.53003 * 109.47070 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47336 * 179.97438 * 5 4 3 7 7 C 1.46895 * 110.99989 * 170.00208 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.25118 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99894 * 294.30296 * 6 5 4 20 20 H 4.44648 * 5.63365 * 180.02562 * 4 1 2 21 21 H 1.08995 * 109.47262 * 289.73724 * 3 2 1 22 22 H 1.09005 * 109.47161 * 169.74005 * 3 2 1 23 23 H 1.08999 * 109.47152 * 59.99925 * 4 3 2 24 24 H 1.09001 * 109.47067 * 299.99395 * 4 3 2 25 25 H 1.09007 * 109.46749 * 59.99839 * 5 4 3 26 26 H 1.09001 * 109.46898 * 299.99763 * 5 4 3 27 27 H 1.08994 * 109.49506 * 67.29451 * 7 6 5 28 28 H 1.08994 * 109.51398 * 307.22151 * 7 6 5 29 29 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 30 30 H 1.08999 * 109.62950 * 65.87970 * 8 7 6 31 31 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 33 33 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 34 34 H 1.09005 * 109.49135 * 292.70628 * 19 6 5 35 35 H 1.09006 * 109.49151 * 52.78388 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.9313 -1.1009 5 6 4.6864 -0.9301 -1.1013 6 7 5.1765 -1.8254 -2.1578 7 6 6.6252 -1.6724 -2.3473 8 6 7.0652 -2.4830 -3.5711 9 7 6.6027 -3.8693 -3.4043 10 6 7.4672 -4.9210 -3.5510 11 1 8.5208 -4.7852 -3.3565 12 6 6.9884 -6.1633 -3.9440 13 7 5.7981 -6.2652 -4.4963 14 14 8.0337 -7.6904 -3.6893 15 1 9.3204 -7.3091 -3.0533 16 1 7.3108 -8.6440 -2.8100 17 1 8.3008 -8.3320 -5.0015 18 6 5.1858 -4.0960 -3.0817 19 6 4.8210 -3.2217 -1.8715 20 1 -1.0499 0.0000 -0.0003 21 1 3.0095 -0.3462 0.9672 22 1 3.0089 1.0121 -0.1830 23 1 2.7929 -0.5843 -2.0681 24 1 2.7936 -1.9427 -0.9178 25 1 5.0502 -1.2768 -0.1340 26 1 5.0489 0.0814 -1.2846 27 1 7.1481 -2.0362 -1.4629 28 1 6.8629 -0.6202 -2.5034 29 1 8.1522 -2.4666 -3.6496 30 1 6.6238 -2.0556 -4.4714 31 1 5.4634 -7.1333 -4.7705 32 1 4.5672 -3.8206 -3.9359 33 1 5.0296 -5.1465 -2.8365 34 1 5.3691 -3.5639 -0.9936 35 1 3.7498 -3.2929 -1.6826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161143742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = 75.122242 kcal Electronic energy + Delta-G solvation = -15067.384823 eV Core-core repulsion = 12681.414780 eV Total energy + Delta-G solvation = -2385.970043 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.25148 -35.69275 -34.03059 -31.86948 -30.54244 -29.85358 -27.22455 -24.92952 -22.96048 -22.42671 -20.77774 -19.06930 -18.14722 -16.73373 -15.44576 -15.17101 -14.59413 -14.31894 -14.06003 -13.55395 -13.33860 -13.13207 -12.98131 -12.44515 -12.06202 -11.39745 -11.32873 -11.01279 -10.86325 -10.72114 -10.39914 -10.28407 -10.14936 -10.10953 -9.99161 -9.69649 -9.51675 -8.48129 -7.76304 -6.63184 -5.75473 -3.16640 2.76739 2.79695 3.38597 3.46328 3.48604 4.24163 4.49765 4.55072 5.05889 5.28108 5.35644 5.41690 5.50074 5.56672 5.68005 5.78879 5.94803 5.98118 6.01064 6.18754 6.22613 6.28783 6.37167 6.40534 6.60626 6.73859 6.97202 7.29399 7.57057 7.67147 7.70030 7.75626 7.85959 8.46494 9.24141 9.87769 10.46705 11.33277 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.005691 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.206429 B = 4918.924011 C = 5294.243113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C -0.013 4.013 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.534 5.534 7 C 0.045 3.955 8 C 0.148 3.852 9 N -0.596 5.596 10 C -0.251 4.251 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.903 5.903 14 Si 0.901 3.099 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.290 1.290 18 C 0.178 3.822 19 C 0.032 3.968 20 H 0.215 0.785 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 10.849 8.055 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.178 4.178 3 C -0.050 4.050 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.259 5.259 7 C -0.084 4.084 8 C 0.021 3.979 9 N -0.320 5.320 10 C -0.381 4.381 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.548 5.548 14 Si 0.731 3.269 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.217 1.217 18 C 0.052 3.948 19 C -0.097 4.097 20 H 0.232 0.768 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.365 10.813 7.542 14.233 hybrid contribution 0.599 -1.048 0.882 1.495 sum -4.766 9.765 8.424 13.749 Atomic orbital electron populations 1.24862 0.95956 1.01528 1.01460 1.23219 0.94652 0.99982 0.99992 1.18748 0.84573 1.01261 1.00453 1.21556 0.95358 0.99610 0.98392 1.22080 0.94471 0.97447 0.93361 1.61939 1.14264 1.06854 1.42840 1.22602 0.87097 0.99193 0.99553 1.20983 0.97046 0.86079 0.93751 1.44153 1.06497 1.00166 1.81142 1.19243 0.90902 0.88608 1.39327 0.91633 1.25021 0.97304 0.98833 0.98595 1.70042 1.18853 1.23232 1.42690 0.86237 0.79746 0.83423 0.77464 1.20316 1.21600 1.21706 1.20955 0.84323 0.97848 0.91685 1.23030 0.98855 0.87804 0.99974 0.76805 0.89809 0.89639 0.90740 0.91333 0.95525 0.91355 0.95537 0.92091 0.92667 0.95691 0.93690 0.95564 0.89450 0.95792 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.41 19.25 29.55 0.57 -1.84 16 2 C -0.18 -2.15 13.34 -37.12 -0.50 -2.65 16 3 C -0.01 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.11 -1.44 5.10 -26.73 -0.14 -1.57 16 5 C 0.05 0.77 4.96 -3.82 -0.02 0.75 16 6 N -0.53 -9.70 4.63 -234.02 -1.08 -10.79 16 7 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 8 C 0.15 3.23 6.69 -3.60 -0.02 3.21 16 9 N -0.60 -15.48 3.03 -171.74 -0.52 -16.00 16 10 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 11 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 12 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 13 N -0.90 -26.64 11.16 55.49 0.62 -26.02 16 14 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 C 0.18 4.41 5.45 -3.37 -0.02 4.39 16 19 C 0.03 0.65 5.48 -3.46 -0.02 0.63 16 20 H 0.22 1.57 7.80 -54.10 -0.42 1.15 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 0.96 6.40 -51.93 -0.33 0.63 16 25 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 29 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -30.67 287.59 -7.81 -38.48 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.56 Total: -3.03 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.56 Total: -3.84 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.98 Total: -52.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.67 -7.81 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161143742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.600 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds