Wall clock time and date at job start Mon Mar 30 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47098 * 49.74283 * 3 2 1 5 5 C 1.53003 * 109.47070 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47336 * 179.97438 * 5 4 3 7 7 C 1.46895 * 110.99989 * 170.00208 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.25118 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99894 * 294.30296 * 6 5 4 20 20 H 4.44648 * 5.63365 * 180.02562 * 4 1 2 21 21 H 1.08995 * 109.47262 * 289.73724 * 3 2 1 22 22 H 1.09005 * 109.47161 * 169.74005 * 3 2 1 23 23 H 1.08999 * 109.47152 * 59.99925 * 4 3 2 24 24 H 1.09001 * 109.47067 * 299.99395 * 4 3 2 25 25 H 1.09007 * 109.46749 * 59.99839 * 5 4 3 26 26 H 1.09001 * 109.46898 * 299.99763 * 5 4 3 27 27 H 1.08994 * 109.49506 * 67.29451 * 7 6 5 28 28 H 1.08994 * 109.51398 * 307.22151 * 7 6 5 29 29 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 30 30 H 1.08999 * 109.62950 * 65.87970 * 8 7 6 31 31 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 33 33 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 34 34 H 1.09005 * 109.49135 * 292.70628 * 19 6 5 35 35 H 1.09006 * 109.49151 * 52.78388 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.9313 -1.1009 5 6 4.6864 -0.9301 -1.1013 6 7 5.1765 -1.8254 -2.1578 7 6 6.6252 -1.6724 -2.3473 8 6 7.0652 -2.4830 -3.5711 9 7 6.6027 -3.8693 -3.4043 10 6 7.4672 -4.9210 -3.5510 11 1 8.5208 -4.7852 -3.3565 12 6 6.9884 -6.1633 -3.9440 13 7 5.7981 -6.2652 -4.4963 14 14 8.0337 -7.6904 -3.6893 15 1 9.3204 -7.3091 -3.0533 16 1 7.3108 -8.6440 -2.8100 17 1 8.3008 -8.3320 -5.0015 18 6 5.1858 -4.0960 -3.0817 19 6 4.8210 -3.2217 -1.8715 20 1 -1.0499 0.0000 -0.0003 21 1 3.0095 -0.3462 0.9672 22 1 3.0089 1.0121 -0.1830 23 1 2.7929 -0.5843 -2.0681 24 1 2.7936 -1.9427 -0.9178 25 1 5.0502 -1.2768 -0.1340 26 1 5.0489 0.0814 -1.2846 27 1 7.1481 -2.0362 -1.4629 28 1 6.8629 -0.6202 -2.5034 29 1 8.1522 -2.4666 -3.6496 30 1 6.6238 -2.0556 -4.4714 31 1 5.4634 -7.1333 -4.7705 32 1 4.5672 -3.8206 -3.9359 33 1 5.0296 -5.1465 -2.8365 34 1 5.3691 -3.5639 -0.9936 35 1 3.7498 -3.2929 -1.6826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161143742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:44 Heat of formation + Delta-G solvation = 55.926938 kcal Electronic energy + Delta-G solvation = -15068.217194 eV Core-core repulsion = 12681.414780 eV Total energy + Delta-G solvation = -2386.802414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78766 -37.02972 -35.47192 -33.46829 -31.94311 -31.60716 -28.76687 -26.45030 -24.61974 -24.15541 -22.00644 -20.82580 -19.02503 -18.64207 -17.03273 -16.42688 -16.26493 -15.65734 -15.38375 -15.32461 -15.08563 -14.64545 -14.39851 -13.64352 -13.45096 -13.04811 -12.94894 -12.64979 -12.55196 -12.26891 -12.07512 -11.97757 -11.77271 -11.50274 -11.33627 -11.04437 -10.92271 -10.60084 -9.23249 -8.68563 -7.88318 -5.33539 1.45742 1.47050 1.58185 1.90065 1.95429 2.50363 3.02821 3.27149 3.57944 3.68875 4.04866 4.25724 4.26311 4.36727 4.49956 4.54008 4.64926 4.68421 4.70771 4.76039 4.86979 4.91392 5.04286 5.19344 5.22780 5.26735 5.36061 5.38617 5.60677 5.66842 6.21234 6.33531 6.37337 6.74989 7.12328 7.83223 8.37912 9.18686 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.005691 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.206429 B = 4918.924011 C = 5294.243113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.007 4.007 4 C -0.104 4.104 5 C 0.058 3.942 6 N -0.547 5.547 7 C 0.056 3.944 8 C 0.142 3.858 9 N -0.616 5.616 10 C -0.265 4.265 11 H 0.069 0.931 12 C -0.052 4.052 13 N -0.937 5.937 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.185 3.815 19 C 0.051 3.949 20 H 0.242 0.758 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.093 0.907 27 H 0.024 0.976 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.250 0.750 32 H -0.004 1.004 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 12.223 9.453 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.142 4.142 5 C -0.069 4.069 6 N -0.272 5.272 7 C -0.073 4.073 8 C 0.016 3.984 9 N -0.340 5.340 10 C -0.395 4.395 11 H 0.086 0.914 12 C -0.247 4.247 13 N -0.584 5.584 14 Si 0.797 3.203 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.059 3.941 19 C -0.079 4.079 20 H 0.258 0.742 21 H 0.114 0.886 22 H 0.122 0.878 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.042 0.958 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.070 12.225 8.956 15.980 hybrid contribution 0.469 -1.406 0.406 1.537 sum -4.600 10.819 9.362 15.029 Atomic orbital electron populations 1.25696 0.96995 1.00436 1.00287 1.23749 0.95663 1.01081 1.01129 1.18721 0.84044 1.01632 0.99999 1.21446 0.94614 0.99321 0.98789 1.22164 0.94950 0.97507 0.92307 1.61880 1.14297 1.05958 1.45034 1.22459 0.87119 1.00420 0.97349 1.21163 0.97449 0.84509 0.95261 1.44447 1.06562 1.01488 1.81487 1.19597 0.91448 0.89677 1.38815 0.91380 1.25818 0.98599 1.01656 0.98635 1.70203 1.20626 1.23584 1.43941 0.85177 0.78524 0.79478 0.77083 1.19017 1.21589 1.21794 1.20710 0.83825 0.97074 0.92512 1.22666 0.99668 0.88549 0.96986 0.74158 0.88631 0.87814 0.91902 0.92933 0.94658 0.88869 0.95804 0.88439 0.92041 0.96730 0.94054 0.98546 0.92659 0.96352 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.32 19.25 74.32 1.43 -2.89 16 2 C -0.22 -4.82 13.34 31.12 0.42 -4.41 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.03 16 4 C -0.10 -2.48 5.10 30.60 0.16 -2.32 16 5 C 0.06 1.46 4.96 86.30 0.43 1.89 16 6 N -0.55 -18.90 4.63 -894.30 -4.14 -23.04 16 7 C 0.06 1.91 5.62 86.38 0.49 2.40 16 8 C 0.14 6.11 6.69 86.35 0.58 6.69 16 9 N -0.62 -32.43 3.03 -697.26 -2.11 -34.54 16 10 C -0.27 -15.05 9.63 84.03 0.81 -14.24 16 11 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 12 C -0.05 -2.97 4.93 84.86 0.42 -2.55 16 13 N -0.94 -56.93 11.16 21.65 0.24 -56.69 16 14 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 18 C 0.18 9.44 5.45 86.50 0.47 9.91 16 19 C 0.05 2.02 5.48 86.53 0.47 2.49 16 20 H 0.24 2.93 7.80 -4.42 -0.03 2.90 16 21 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.41 6.40 -2.39 -0.02 1.39 16 25 H 0.04 0.86 8.12 -2.38 -0.02 0.84 16 26 H 0.09 1.94 7.97 -2.39 -0.02 1.92 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 2.67 7.99 -2.39 -0.02 2.65 16 29 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.06 3.15 6.12 -2.38 -0.01 3.13 16 34 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.08 2.85 6.16 -2.38 -0.01 2.83 16 Total: -1.00 -66.95 287.59 2.88 -64.07 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.04 Total: 5.62 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.83 Total: -2.99 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -6.01 Total: -114.27 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.95 2.88 -64.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161143742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.996 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds