Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29924 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47241 * 240.00053 * 3 2 1 5 5 H 1.48493 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47404 * 120.00427 * 3 2 1 7 7 C 1.41588 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00150 * 197.70688 * 7 2 1 9 9 C 1.38532 * 120.00013 * 17.70433 * 7 2 1 10 10 C 1.46544 * 119.96850 * 204.68917 * 9 7 2 11 11 C 1.34651 * 120.06352 * 179.72079 * 10 9 7 12 12 C 1.46763 * 119.97179 * 0.57966 * 11 10 9 13 13 N 1.31432 * 120.03761 * 179.69654 * 12 11 10 14 14 C 1.24995 * 120.00129 * 359.72578 * 13 12 11 15 15 O 8.14190 * 82.80974 * 184.49914 * 2 1 3 16 16 C 1.46871 * 119.92781 * 359.42556 * 12 11 10 17 17 Cl 1.73598 * 120.03102 * 180.29795 * 16 12 11 18 18 C 1.34804 * 119.93672 * 0.26957 * 16 12 11 19 19 H 0.96994 * 120.00256 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.96916 * 0.05153 * 10 9 7 21 21 H 1.07993 * 120.01372 * 180.27708 * 11 10 9 22 22 H 1.08007 * 119.98587 * 179.97438 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2992 0.0000 0.0000 3 14 2.2332 1.6178 0.0000 4 1 3.0870 1.6965 -1.2125 5 1 1.2682 2.7464 0.0006 6 1 3.0871 1.6965 1.2124 7 6 2.0072 -1.2262 0.0005 8 1 3.0489 -1.2482 0.2850 9 6 1.3638 -2.3977 -0.3638 10 6 1.8594 -3.6874 0.1246 11 6 1.2321 -4.8268 -0.2238 12 6 0.0585 -4.7781 -1.1037 13 7 -0.5512 -5.8900 -1.4493 14 6 -0.1284 -6.9901 -1.0328 15 8 0.2802 -8.0530 -0.6337 16 6 -0.4375 -3.4851 -1.5927 17 17 -1.8301 -3.4239 -2.6274 18 6 0.1893 -2.3459 -1.2370 19 1 -0.4850 0.8400 0.0004 20 1 2.7255 -3.7236 0.7688 21 1 1.5954 -5.7764 0.1402 22 1 -0.1746 -1.3947 -1.5965 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163414158.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -5.488722 kcal Electronic energy + Delta-G solvation = -12076.114133 eV Core-core repulsion = 9622.139755 eV Total energy + Delta-G solvation = -2453.974377 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27118 -39.05674 -37.31545 -37.10705 -35.12141 -31.46817 -30.86282 -26.97769 -23.96715 -22.49072 -20.65775 -19.55834 -18.34584 -17.42265 -16.82525 -16.71506 -16.09551 -15.23081 -14.69970 -14.60533 -14.12786 -13.92303 -13.36142 -12.98693 -12.72944 -12.41852 -12.10098 -12.03239 -11.59709 -11.50700 -11.08252 -10.92453 -9.62811 -9.10554 -8.69292 -6.32808 0.06222 0.54818 1.05957 1.35151 1.41765 1.50898 1.55473 1.87213 2.10423 2.53200 2.58868 3.40560 4.08093 4.44155 4.60455 4.78352 4.93877 5.22405 5.30787 5.70881 5.75596 5.89102 6.04717 6.24352 6.44502 6.69444 7.47026 7.87946 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.008524 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.841868 B = 3284.152037 C = 3958.054278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.033 3.967 3 Si 0.995 3.005 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.403 4.403 8 H 0.111 0.889 9 C 0.096 3.904 10 C -0.238 4.238 11 C -0.084 4.084 12 C -0.126 4.126 13 N -0.425 5.425 14 C 0.531 3.469 15 O -0.401 6.401 16 C 0.044 3.956 17 Cl -0.091 7.091 18 C -0.196 4.196 19 H 0.310 0.690 20 H 0.123 0.877 21 H 0.115 0.885 22 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 3.531 -0.337 4.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.173 1.173 7 C -0.426 4.426 8 H 0.129 0.871 9 C 0.091 3.909 10 C -0.257 4.257 11 C -0.104 4.104 12 C -0.227 4.227 13 N -0.163 5.163 14 C 0.235 3.765 15 O -0.264 6.264 16 C 0.016 3.984 17 Cl -0.062 7.062 18 C -0.216 4.216 19 H 0.123 0.877 20 H 0.141 0.859 21 H 0.133 0.867 22 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.412 3.325 -0.617 3.665 hybrid contribution 0.194 0.156 0.214 0.328 sum 1.606 3.482 -0.404 3.855 Atomic orbital electron populations 1.69415 1.10116 1.33475 1.24409 1.27443 0.95542 1.05673 0.90728 0.85014 0.78927 0.73777 0.80959 1.17753 1.18717 1.17328 1.20311 0.99351 0.91520 1.31414 0.87070 1.19869 0.90029 0.92953 0.88009 1.21586 1.04828 0.91632 1.07660 1.22173 0.93925 0.98070 0.96274 1.18184 1.03130 0.84584 1.16785 1.61930 1.29920 0.93992 1.30422 1.25642 0.77077 0.88084 0.85692 1.90787 1.53238 1.20806 1.61542 1.21265 0.89470 0.92443 0.95254 1.98255 1.42384 1.98731 1.66816 1.21551 1.00737 0.95518 1.03757 0.87705 0.85901 0.86710 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.02 10.88 22.11 0.24 -31.78 14 2 C 0.03 1.29 5.16 85.80 0.44 1.74 14 3 Si 1.00 29.12 29.61 68.60 2.03 31.15 14 4 H -0.25 -7.37 7.11 99.48 0.71 -6.66 14 5 H -0.26 -7.34 7.11 99.48 0.71 -6.64 14 6 H -0.25 -7.01 7.11 99.48 0.71 -6.30 14 7 C -0.40 -17.37 9.02 23.17 0.21 -17.16 14 8 H 0.11 4.34 7.93 -2.91 -0.02 4.32 14 9 C 0.10 4.49 5.83 -18.90 -0.11 4.38 14 10 C -0.24 -10.41 9.92 23.61 0.23 -10.17 14 11 C -0.08 -3.66 9.33 23.68 0.22 -3.44 14 12 C -0.13 -5.78 6.84 43.69 0.30 -5.48 14 13 N -0.42 -18.32 9.60 -206.74 -1.98 -20.30 14 14 C 0.53 21.13 14.89 131.22 1.95 23.08 14 15 O -0.40 -15.82 17.98 -1.17 -0.02 -15.84 14 16 C 0.04 2.04 6.49 23.74 0.15 2.20 14 17 Cl -0.09 -3.78 28.58 -2.72 -0.08 -3.86 14 18 C -0.20 -9.35 8.49 23.62 0.20 -9.15 14 19 H 0.31 11.54 8.28 -92.71 -0.77 10.78 14 20 H 0.12 4.78 8.06 -2.91 -0.02 4.76 14 21 H 0.12 4.52 7.10 -2.91 -0.02 4.50 14 22 H 0.12 6.02 6.22 -2.91 -0.02 6.01 14 Total: -1.00 -48.94 231.52 5.06 -43.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.27 Total: 10.76 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 3.60 Total: -14.01 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -1.74 Total: -52.08 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.02 Total: -15.84 kcal Atomic # 14 Polarization: 29.12 SS G_CDS: 2.03 Total: 31.15 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.08 Total: -3.86 kcal Total: -48.94 5.06 -43.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163414158.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.385 kcal (2) G-P(sol) polarization free energy of solvation -48.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds