Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48511 * 109.47064 * 270.00312 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00127 * 3 2 1 7 7 C 1.39090 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00389 * 0.02562 * 7 2 1 9 9 N 1.36555 * 119.99730 * 179.97438 * 7 2 1 10 10 C 1.36646 * 119.99758 * 180.02562 * 9 7 2 11 11 C 1.35165 * 119.99384 * 180.02562 * 10 9 7 12 12 C 1.41656 * 119.99697 * 179.97438 * 11 10 9 13 13 O 1.21982 * 119.99812 * 359.97438 * 12 11 10 14 14 C 1.46776 * 120.00013 * 180.02562 * 12 11 10 15 15 C 1.36691 * 125.46061 * 179.72052 * 14 12 11 16 16 C 1.37508 * 113.28131 * 179.79471 * 15 14 12 17 17 C 1.33811 * 115.10168 * 0.49496 * 16 15 14 18 18 S 1.70623 * 110.96338 * 359.72363 * 17 16 15 19 19 H 0.96996 * 120.00293 * 0.02562 * 1 2 3 20 20 H 0.97008 * 119.99587 * 0.02562 * 9 7 2 21 21 H 1.07995 * 120.00335 * 0.26831 * 10 9 7 22 22 H 1.07999 * 120.00254 * 359.97438 * 11 10 9 23 23 H 1.07999 * 123.35520 * 359.97438 * 15 14 12 24 24 H 1.08007 * 122.44772 * 180.21634 * 16 15 14 25 25 H 1.07995 * 124.52300 * 179.72388 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 -1.4002 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2046 0.0005 8 1 1.4688 -2.1399 0.0005 9 7 3.3744 -1.2046 0.0000 10 6 4.0575 -2.3880 0.0000 11 6 5.4092 -2.3879 0.0000 12 6 6.1175 -3.6147 0.0006 13 8 5.5075 -4.6711 0.0015 14 6 7.5852 -3.6147 0.0011 15 6 8.3782 -4.7280 0.0071 16 6 9.7224 -4.4380 0.0016 17 6 10.0216 -3.1337 0.0020 18 16 8.6052 -2.1824 0.0017 19 1 -0.4850 0.8400 -0.0004 20 1 3.8594 -0.3645 -0.0004 21 1 3.5176 -3.3233 -0.0040 22 1 5.9492 -1.4526 -0.0004 23 1 7.9880 -5.7350 0.0125 24 1 10.4811 -5.2066 0.0018 25 1 11.0258 -2.7362 0.0024 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000210078437.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = 5.292171 kcal Electronic energy + Delta-G solvation = -11954.477915 eV Core-core repulsion = 9638.847833 eV Total energy + Delta-G solvation = -2315.630082 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.50746 -37.11651 -36.32450 -32.83975 -30.33629 -29.10541 -25.55499 -24.01252 -21.75911 -19.97328 -18.73396 -18.31267 -16.69637 -15.76508 -15.34062 -14.70630 -14.20379 -13.67428 -13.38304 -13.19289 -12.53389 -12.43637 -12.32351 -12.03327 -11.78922 -11.24639 -11.11891 -10.85823 -10.52676 -10.42210 -9.29331 -8.75114 -8.47307 -8.29709 -7.33318 -6.88509 -4.19538 0.88224 1.91050 2.32674 2.35494 2.81805 2.84174 2.90231 3.03713 3.69404 4.37908 4.57653 4.80866 5.15216 5.25012 5.68432 5.75697 6.07844 6.23825 6.45637 6.64697 6.81866 6.86967 7.15980 7.42188 7.70997 8.17030 8.80463 8.85597 8.93459 10.20771 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.050174 B = 0.005954 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.928327 B = 4701.322195 C = 5249.406932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.051 3.949 3 Si 0.884 3.116 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.331 4.331 8 H 0.123 0.877 9 N -0.524 5.524 10 C 0.220 3.780 11 C -0.484 4.484 12 C 0.450 3.550 13 O -0.543 6.543 14 C -0.228 4.228 15 C -0.105 4.105 16 C -0.145 4.145 17 C -0.267 4.267 18 S 0.197 5.803 19 H 0.285 0.715 20 H 0.381 0.619 21 H 0.143 0.857 22 H 0.095 0.905 23 H 0.145 0.855 24 H 0.134 0.866 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.768 0.247 -0.015 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.158 4.158 3 Si 0.708 3.292 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.460 4.460 8 H 0.140 0.860 9 N -0.121 5.121 10 C 0.067 3.933 11 C -0.516 4.516 12 C 0.342 3.658 13 O -0.432 6.432 14 C -0.347 4.347 15 C -0.136 4.136 16 C -0.177 4.177 17 C -0.405 4.405 18 S 0.463 5.537 19 H 0.095 0.905 20 H 0.216 0.784 21 H 0.161 0.839 22 H 0.113 0.887 23 H 0.163 0.837 24 H 0.151 0.849 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.662 1.527 -0.014 12.754 hybrid contribution 1.101 -0.234 0.017 1.126 sum 13.763 1.293 0.003 13.824 Atomic orbital electron populations 1.69576 1.06005 1.29122 1.43260 1.25215 0.95733 0.99063 0.95798 0.86542 0.80132 0.82654 0.79826 1.18709 1.19267 1.18687 1.19711 0.79196 0.97241 1.49835 0.85988 1.41297 1.07081 1.06048 1.57641 1.21422 0.92398 0.89387 0.90054 1.20277 0.93478 0.96994 1.40809 1.17274 0.83920 0.89364 0.75216 1.90607 1.69335 1.34950 1.48351 1.25906 1.01236 0.95831 1.11764 1.20805 0.92117 0.99637 1.01061 1.19980 0.96468 0.95986 1.05235 1.25228 1.04231 0.98799 1.12198 1.83002 0.93835 1.09206 1.67612 0.90456 0.78361 0.83938 0.88663 0.83695 0.84863 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.75 13.95 55.50 0.77 -20.98 15 2 C 0.05 1.24 5.50 -17.44 -0.10 1.14 15 3 Si 0.88 17.56 27.73 -169.99 -4.71 12.84 15 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -4.91 6.52 56.52 0.37 -4.54 15 7 C -0.33 -8.05 10.36 -15.13 -0.16 -8.21 15 8 H 0.12 3.16 8.04 -52.49 -0.42 2.74 15 9 N -0.52 -11.41 5.12 -11.65 -0.06 -11.47 15 10 C 0.22 4.72 9.89 -16.50 -0.16 4.55 15 11 C -0.48 -9.98 9.31 -39.37 -0.37 -10.35 15 12 C 0.45 9.56 6.90 -34.83 -0.24 9.32 15 13 O -0.54 -12.95 16.61 4.93 0.08 -12.87 15 14 C -0.23 -4.13 6.41 -36.69 -0.24 -4.36 15 15 C -0.11 -1.71 10.02 -40.41 -0.40 -2.11 15 16 C -0.14 -1.94 10.15 -41.40 -0.42 -2.36 15 17 C -0.27 -3.39 10.92 29.18 0.32 -3.07 15 18 S 0.20 2.85 22.02 -107.50 -2.37 0.48 15 19 H 0.28 6.71 8.31 -40.82 -0.34 6.38 15 20 H 0.38 7.70 5.70 -40.82 -0.23 7.47 15 21 H 0.14 3.12 7.43 -52.49 -0.39 2.73 15 22 H 0.10 1.82 7.29 -52.49 -0.38 1.44 15 23 H 0.15 2.29 8.06 -52.49 -0.42 1.87 15 24 H 0.13 1.42 8.06 -52.48 -0.42 0.99 15 25 H 0.16 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 246.60 15.07 3.72 3.72 Total: -1.00 -26.99 246.60 -6.20 -33.19 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -1.86 Total: 10.55 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.76 Total: -15.45 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.71 Total: -32.45 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -4.71 Total: 12.84 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.37 Total: 0.48 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.99 -6.20 -33.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210078437.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.477 kcal (2) G-P(sol) polarization free energy of solvation -26.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds