Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48511 * 109.47064 * 270.00312 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00127 * 3 2 1 7 7 C 1.39090 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00389 * 0.02562 * 7 2 1 9 9 N 1.36555 * 119.99730 * 179.97438 * 7 2 1 10 10 C 1.36646 * 119.99758 * 180.02562 * 9 7 2 11 11 C 1.35165 * 119.99384 * 180.02562 * 10 9 7 12 12 C 1.41656 * 119.99697 * 179.97438 * 11 10 9 13 13 O 1.21982 * 119.99812 * 359.97438 * 12 11 10 14 14 C 1.46776 * 120.00013 * 180.02562 * 12 11 10 15 15 C 1.36691 * 125.46061 * 179.72052 * 14 12 11 16 16 C 1.37508 * 113.28131 * 179.79471 * 15 14 12 17 17 C 1.33811 * 115.10168 * 0.49496 * 16 15 14 18 18 S 1.70623 * 110.96338 * 359.72363 * 17 16 15 19 19 H 0.96996 * 120.00293 * 0.02562 * 1 2 3 20 20 H 0.97008 * 119.99587 * 0.02562 * 9 7 2 21 21 H 1.07995 * 120.00335 * 0.26831 * 10 9 7 22 22 H 1.07999 * 120.00254 * 359.97438 * 11 10 9 23 23 H 1.07999 * 123.35520 * 359.97438 * 15 14 12 24 24 H 1.08007 * 122.44772 * 180.21634 * 16 15 14 25 25 H 1.07995 * 124.52300 * 179.72388 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 -1.4002 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2046 0.0005 8 1 1.4688 -2.1399 0.0005 9 7 3.3744 -1.2046 0.0000 10 6 4.0575 -2.3880 0.0000 11 6 5.4092 -2.3879 0.0000 12 6 6.1175 -3.6147 0.0006 13 8 5.5075 -4.6711 0.0015 14 6 7.5852 -3.6147 0.0011 15 6 8.3782 -4.7280 0.0071 16 6 9.7224 -4.4380 0.0016 17 6 10.0216 -3.1337 0.0020 18 16 8.6052 -2.1824 0.0017 19 1 -0.4850 0.8400 -0.0004 20 1 3.8594 -0.3645 -0.0004 21 1 3.5176 -3.3233 -0.0040 22 1 5.9492 -1.4526 -0.0004 23 1 7.9880 -5.7350 0.0125 24 1 10.4811 -5.2066 0.0018 25 1 11.0258 -2.7362 0.0024 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210078437.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = -10.641024 kcal Electronic energy + Delta-G solvation = -11955.168830 eV Core-core repulsion = 9638.847833 eV Total energy + Delta-G solvation = -2316.320997 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11160 -38.60251 -37.86479 -34.65673 -32.01086 -30.47033 -27.14726 -25.45997 -23.29861 -21.64729 -19.97113 -19.93016 -18.25867 -17.27129 -16.86098 -16.14450 -15.85329 -15.26183 -15.00357 -14.65115 -14.18226 -13.97922 -13.53276 -13.52414 -13.00836 -12.83404 -12.71570 -12.58395 -12.08288 -11.66910 -11.07939 -10.45747 -9.71919 -9.41452 -9.07394 -8.69256 -6.08719 -0.39888 0.74591 0.79444 1.18614 1.25978 1.33343 1.35427 1.76141 2.05275 2.69053 2.87858 3.02169 3.81084 4.22162 4.35217 4.55480 4.65618 5.00719 5.10293 5.16195 5.30122 5.43972 5.52907 5.68601 5.92167 6.37646 7.02515 7.07220 7.24859 8.44021 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.050174 B = 0.005954 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.928327 B = 4701.322195 C = 5249.406932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.241 1.241 7 C -0.348 4.348 8 H 0.087 0.913 9 N -0.529 5.529 10 C 0.224 3.776 11 C -0.475 4.475 12 C 0.447 3.553 13 O -0.579 6.579 14 C -0.289 4.289 15 C -0.095 4.095 16 C -0.157 4.157 17 C -0.239 4.239 18 S 0.226 5.774 19 H 0.289 0.711 20 H 0.392 0.608 21 H 0.128 0.872 22 H 0.117 0.883 23 H 0.139 0.861 24 H 0.166 0.834 25 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.664 1.537 0.012 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.771 3.229 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.165 1.165 7 C -0.477 4.477 8 H 0.105 0.895 9 N -0.128 5.128 10 C 0.073 3.927 11 C -0.506 4.506 12 C 0.341 3.659 13 O -0.471 6.471 14 C -0.407 4.407 15 C -0.128 4.128 16 C -0.187 4.187 17 C -0.377 4.377 18 S 0.493 5.507 19 H 0.099 0.901 20 H 0.229 0.771 21 H 0.145 0.855 22 H 0.135 0.865 23 H 0.156 0.844 24 H 0.183 0.817 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 16.577 2.809 0.014 16.813 hybrid contribution 0.161 -0.844 0.006 0.859 sum 16.738 1.965 0.020 16.853 Atomic orbital electron populations 1.69688 1.07797 1.30370 1.45274 1.26043 0.96446 1.02615 0.94931 0.85521 0.79515 0.77514 0.80350 1.17860 1.18956 1.16472 1.19483 0.80377 0.96472 1.51397 0.89519 1.40996 1.05942 1.06321 1.59581 1.21425 0.92830 0.89161 0.89244 1.20517 0.93005 0.97970 1.39135 1.17697 0.85966 0.88724 0.73477 1.90581 1.70886 1.36112 1.49529 1.25576 0.99885 0.98721 1.16563 1.21058 0.93591 0.99068 0.99119 1.20205 0.95605 0.97344 1.05553 1.25756 1.05274 0.98201 1.08432 1.82836 0.93677 1.07408 1.66803 0.90069 0.77133 0.85453 0.86497 0.84367 0.81656 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.73 13.95 21.69 0.30 -47.42 15 2 C 0.00 0.21 5.50 84.97 0.47 0.68 15 3 Si 0.95 35.57 27.73 68.60 1.90 37.47 15 4 H -0.25 -9.15 7.11 99.48 0.71 -8.45 15 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 15 6 H -0.24 -8.09 6.52 99.48 0.65 -7.44 15 7 C -0.35 -17.64 10.36 84.16 0.87 -16.77 15 8 H 0.09 4.86 8.04 -2.91 -0.02 4.83 15 9 N -0.53 -23.17 5.12 -190.77 -0.98 -24.15 15 10 C 0.22 9.77 9.89 83.23 0.82 10.59 15 11 C -0.47 -19.27 9.31 22.41 0.21 -19.06 15 12 C 0.45 18.94 6.90 25.35 0.17 19.11 15 13 O -0.58 -28.29 16.61 -5.26 -0.09 -28.38 15 14 C -0.29 -9.99 6.41 24.14 0.15 -9.83 15 15 C -0.10 -2.91 10.02 21.73 0.22 -2.69 15 16 C -0.16 -3.53 10.15 21.09 0.21 -3.32 15 17 C -0.24 -4.82 10.92 66.81 0.73 -4.09 15 18 S 0.23 5.72 22.02 -56.49 -1.24 4.47 15 19 H 0.29 14.05 8.31 -92.71 -0.77 13.28 15 20 H 0.39 15.30 5.70 -92.70 -0.53 14.77 15 21 H 0.13 5.90 7.43 -2.91 -0.02 5.88 15 22 H 0.12 4.21 7.29 -2.91 -0.02 4.18 15 23 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.17 2.67 8.06 -2.91 -0.02 2.64 15 25 H 0.20 2.45 8.06 -2.91 -0.02 2.43 15 Total: -1.00 -60.40 246.60 4.39 -56.02 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.63 Total: 27.36 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 3.86 Total: -25.37 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -0.67 Total: -71.57 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.09 Total: -28.38 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.90 Total: 37.47 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.24 Total: 4.47 kcal Total: -60.40 4.39 -56.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210078437.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.376 kcal (2) G-P(sol) polarization free energy of solvation -60.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds