Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47351 * 239.99967 * 2 1 3 5 5 N 1.46496 * 109.47127 * 119.99539 * 2 1 3 6 6 C 1.36344 * 125.63657 * 354.68345 * 5 2 1 7 7 C 1.34856 * 108.21975 * 179.97438 * 6 5 2 8 8 C 1.40900 * 107.41614 * 359.77127 * 7 6 5 9 9 C 1.34852 * 107.41322 * 0.37302 * 8 7 6 10 10 C 1.50704 * 125.88646 * 179.88500 * 9 8 7 11 11 H 1.09006 * 109.47117 * 204.35394 * 10 9 8 12 12 N 1.46903 * 109.47086 * 324.35183 * 10 9 8 13 13 C 1.50695 * 109.47164 * 84.35216 * 10 9 8 14 14 H 1.08009 * 119.99879 * 354.27517 * 13 10 9 15 15 C 1.37874 * 120.00419 * 174.26927 * 13 10 9 16 16 N 1.31513 * 120.00579 * 156.24994 * 15 13 10 17 17 Si 1.86808 * 119.99652 * 336.25328 * 15 13 10 18 18 H 1.48504 * 109.46900 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46888 * 299.99520 * 17 15 13 20 20 H 1.48497 * 109.47244 * 59.99799 * 17 15 13 21 21 H 1.08998 * 109.47386 * 299.99767 * 1 2 3 22 22 H 1.08997 * 109.47102 * 60.00535 * 1 2 3 23 23 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46902 * 185.94116 * 3 2 1 25 25 H 1.08994 * 109.47055 * 305.94025 * 3 2 1 26 26 H 1.08997 * 109.47191 * 65.94561 * 3 2 1 27 27 H 1.09001 * 109.46973 * 299.99630 * 4 2 1 28 28 H 1.08997 * 109.47428 * 59.99697 * 4 2 1 29 29 H 1.09000 * 109.47167 * 179.97438 * 4 2 1 30 30 H 1.07996 * 125.89207 * 359.94108 * 6 5 2 31 31 H 1.07998 * 126.29001 * 180.02562 * 7 6 5 32 32 H 1.07994 * 126.29040 * 180.23630 * 8 7 6 33 33 H 1.00901 * 110.99967 * 64.99710 * 12 10 9 34 34 H 1.00897 * 110.99991 * 188.95180 * 12 10 9 35 35 H 0.97000 * 119.99627 * 354.95490 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.2429 -1.1599 2.2147 7 6 2.0506 -1.7323 3.1304 8 6 3.3728 -1.6166 2.6574 9 6 3.3233 -0.9706 1.4747 10 6 4.5059 -0.6236 0.6074 11 1 4.2556 0.2288 -0.0243 12 7 5.6537 -0.2821 1.4583 13 6 4.8570 -1.8052 -0.2594 14 1 4.3426 -2.7454 -0.1249 15 6 5.8348 -1.6863 -1.2241 16 7 6.4717 -2.7551 -1.6503 17 14 6.2550 -0.0068 -1.9259 18 1 7.3315 -0.1489 -2.9390 19 1 5.0487 0.5791 -2.5636 20 1 6.7193 0.8845 -0.8326 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1247 1.4444 -0.1064 25 1 1.5923 1.9861 -0.8320 26 1 1.7661 1.9247 0.9384 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 0.1673 -1.0856 2.2776 31 1 1.7406 -2.1978 4.0542 32 1 4.2625 -1.9769 3.1522 33 1 5.9567 -1.0813 1.9945 34 1 6.4121 0.0932 0.9088 35 1 6.3062 -3.6160 -1.2351 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211784711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = 43.145457 kcal Electronic energy + Delta-G solvation = -16186.001459 eV Core-core repulsion = 13798.644799 eV Total energy + Delta-G solvation = -2387.356660 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75168 -35.89926 -34.80826 -31.78658 -29.16438 -28.47887 -27.06600 -26.52647 -25.52515 -21.91022 -20.81748 -19.34105 -17.70166 -17.45338 -16.25878 -14.88964 -14.56140 -13.85083 -13.82501 -13.33806 -13.21250 -12.62454 -12.39275 -12.33229 -12.06396 -11.90404 -11.73210 -11.46022 -11.35417 -11.17405 -10.86845 -10.68662 -10.45841 -10.21097 -9.87075 -9.43182 -8.43860 -7.78291 -7.59649 -7.13651 -6.46491 -4.22638 3.15437 3.23557 3.29309 3.46088 3.60920 3.96209 4.32427 4.90103 5.04790 5.09335 5.24121 5.50870 5.64053 5.80218 5.83877 5.94654 5.99767 6.06962 6.15720 6.20595 6.29922 6.37645 6.43402 6.54292 6.80745 7.03835 7.20415 7.25471 7.77046 7.95730 8.14825 8.22842 8.28758 8.45308 8.57113 8.85421 9.44063 10.73612 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.012342 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.881475 B = 2268.122852 C = 2707.632229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 C -0.162 4.162 4 C -0.176 4.176 5 N -0.435 5.435 6 C -0.047 4.047 7 C -0.205 4.205 8 C -0.215 4.215 9 C 0.094 3.906 10 C 0.241 3.759 11 H 0.041 0.959 12 N -0.851 5.851 13 C -0.625 4.625 14 H 0.060 0.940 15 C 0.039 3.961 16 N -0.888 5.888 17 Si 1.025 2.975 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.274 1.274 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.331 0.669 34 H 0.327 0.673 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 6.567 2.389 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.075 3.925 3 C -0.220 4.220 4 C -0.233 4.233 5 N -0.112 5.112 6 C -0.176 4.176 7 C -0.231 4.231 8 C -0.238 4.238 9 C -0.019 4.019 10 C 0.131 3.869 11 H 0.058 0.942 12 N -0.381 5.381 13 C -0.665 4.665 14 H 0.078 0.922 15 C -0.169 4.169 16 N -0.520 5.520 17 Si 0.852 3.148 18 H -0.207 1.207 19 H -0.206 1.206 20 H -0.200 1.200 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.164 0.836 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.825 8.024 1.289 11.997 hybrid contribution -0.597 -1.708 0.601 1.906 sum -9.422 6.316 1.890 11.500 Atomic orbital electron populations 1.22088 0.93620 1.02678 1.02495 1.20651 0.94095 0.92516 0.85278 1.22312 1.03167 0.94482 1.02036 1.22538 1.06701 0.99720 0.94338 1.44146 1.06105 1.44864 1.16114 1.21378 0.96198 1.08620 0.91361 1.20695 0.93771 1.08184 1.00452 1.20365 0.96417 1.09224 0.97825 1.20532 0.84149 1.00745 0.96455 1.17881 0.85001 0.95478 0.88543 0.94187 1.59486 1.10723 1.37448 1.30451 1.22505 1.23816 0.98385 1.21770 0.92225 1.25711 0.92433 1.04075 0.94676 1.70814 1.36662 1.01092 1.43460 0.84263 0.77202 0.75874 0.77446 1.20705 1.20596 1.20049 0.92034 0.91062 0.91834 0.90849 0.91464 0.92226 0.92479 0.92344 0.87270 0.83593 0.86154 0.85984 0.85724 0.85968 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 7.36 37.16 0.27 -1.72 16 2 C 0.16 2.68 1.04 -131.82 -0.14 2.54 16 3 C -0.16 -2.57 8.48 37.16 0.32 -2.25 16 4 C -0.18 -3.27 8.31 37.15 0.31 -2.96 16 5 N -0.43 -8.60 2.62 -98.71 -0.26 -8.86 16 6 C -0.05 -0.87 10.35 -16.75 -0.17 -1.05 16 7 C -0.21 -4.01 10.86 -39.77 -0.43 -4.44 16 8 C -0.21 -4.74 10.21 -39.78 -0.41 -5.14 16 9 C 0.09 2.13 5.40 -81.79 -0.44 1.68 16 10 C 0.24 5.65 1.75 -70.02 -0.12 5.53 16 11 H 0.04 0.94 2.86 -51.93 -0.15 0.79 16 12 N -0.85 -19.04 8.99 -6.65 -0.06 -19.10 16 13 C -0.63 -16.64 7.02 -34.44 -0.24 -16.88 16 14 H 0.06 1.80 7.99 -52.48 -0.42 1.38 16 15 C 0.04 1.06 5.38 -17.82 -0.10 0.96 16 16 N -0.89 -25.92 13.70 55.43 0.76 -25.16 16 17 Si 1.02 23.42 26.59 -169.99 -4.52 18.90 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.81 5.99 56.52 0.34 -5.47 16 21 H 0.06 0.75 7.63 -51.93 -0.40 0.35 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 24 H 0.07 1.32 5.54 -51.93 -0.29 1.03 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 2.41 3.74 -51.93 -0.19 2.22 16 30 H 0.15 2.19 7.11 -52.49 -0.37 1.82 16 31 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.12 2.64 7.61 -52.49 -0.40 2.24 16 33 H 0.33 7.36 8.23 -39.29 -0.32 7.04 16 34 H 0.33 7.22 6.47 -39.29 -0.25 6.96 16 35 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 LS Contribution 270.96 15.07 4.08 4.08 Total: -1.00 -29.01 270.96 -6.11 -35.12 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -4.96 Total: 18.71 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.15 Total: -23.71 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.44 Total: -53.11 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.52 Total: 18.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.01 -6.11 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211784711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.264 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds