Wall clock time and date at job start Mon Mar 30 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47351 * 239.99967 * 2 1 3 5 5 N 1.46496 * 109.47127 * 119.99539 * 2 1 3 6 6 C 1.36344 * 125.63657 * 354.68345 * 5 2 1 7 7 C 1.34856 * 108.21975 * 179.97438 * 6 5 2 8 8 C 1.40900 * 107.41614 * 359.77127 * 7 6 5 9 9 C 1.34852 * 107.41322 * 0.37302 * 8 7 6 10 10 C 1.50704 * 125.88646 * 179.88500 * 9 8 7 11 11 H 1.09006 * 109.47117 * 204.35394 * 10 9 8 12 12 N 1.46903 * 109.47086 * 324.35183 * 10 9 8 13 13 C 1.50695 * 109.47164 * 84.35216 * 10 9 8 14 14 H 1.08009 * 119.99879 * 354.27517 * 13 10 9 15 15 C 1.37874 * 120.00419 * 174.26927 * 13 10 9 16 16 N 1.31513 * 120.00579 * 156.24994 * 15 13 10 17 17 Si 1.86808 * 119.99652 * 336.25328 * 15 13 10 18 18 H 1.48504 * 109.46900 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46888 * 299.99520 * 17 15 13 20 20 H 1.48497 * 109.47244 * 59.99799 * 17 15 13 21 21 H 1.08998 * 109.47386 * 299.99767 * 1 2 3 22 22 H 1.08997 * 109.47102 * 60.00535 * 1 2 3 23 23 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46902 * 185.94116 * 3 2 1 25 25 H 1.08994 * 109.47055 * 305.94025 * 3 2 1 26 26 H 1.08997 * 109.47191 * 65.94561 * 3 2 1 27 27 H 1.09001 * 109.46973 * 299.99630 * 4 2 1 28 28 H 1.08997 * 109.47428 * 59.99697 * 4 2 1 29 29 H 1.09000 * 109.47167 * 179.97438 * 4 2 1 30 30 H 1.07996 * 125.89207 * 359.94108 * 6 5 2 31 31 H 1.07998 * 126.29001 * 180.02562 * 7 6 5 32 32 H 1.07994 * 126.29040 * 180.23630 * 8 7 6 33 33 H 1.00901 * 110.99967 * 64.99710 * 12 10 9 34 34 H 1.00897 * 110.99991 * 188.95180 * 12 10 9 35 35 H 0.97000 * 119.99627 * 354.95490 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.2429 -1.1599 2.2147 7 6 2.0506 -1.7323 3.1304 8 6 3.3728 -1.6166 2.6574 9 6 3.3233 -0.9706 1.4747 10 6 4.5059 -0.6236 0.6074 11 1 4.2556 0.2288 -0.0243 12 7 5.6537 -0.2821 1.4583 13 6 4.8570 -1.8052 -0.2594 14 1 4.3426 -2.7454 -0.1249 15 6 5.8348 -1.6863 -1.2241 16 7 6.4717 -2.7551 -1.6503 17 14 6.2550 -0.0068 -1.9259 18 1 7.3315 -0.1489 -2.9390 19 1 5.0487 0.5791 -2.5636 20 1 6.7193 0.8845 -0.8326 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1247 1.4444 -0.1064 25 1 1.5923 1.9861 -0.8320 26 1 1.7661 1.9247 0.9384 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 0.1673 -1.0856 2.2776 31 1 1.7406 -2.1978 4.0542 32 1 4.2625 -1.9769 3.1522 33 1 5.9567 -1.0813 1.9945 34 1 6.4121 0.0932 0.9088 35 1 6.3062 -3.6160 -1.2351 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211784711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:18 Heat of formation + Delta-G solvation = 23.504804 kcal Electronic energy + Delta-G solvation = -16186.853141 eV Core-core repulsion = 13798.644799 eV Total energy + Delta-G solvation = -2388.208343 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26686 -37.23667 -36.72586 -33.84105 -30.62673 -30.03859 -28.38209 -27.83286 -27.45636 -23.74015 -22.29616 -20.89303 -19.76271 -19.05151 -17.72848 -16.59228 -15.97141 -15.58913 -15.27822 -15.04482 -14.76346 -14.40479 -14.07074 -13.80603 -13.57698 -13.31134 -13.05747 -12.81262 -12.76322 -12.59857 -12.52038 -12.17225 -12.00865 -11.87919 -11.58675 -11.35873 -10.55264 -9.53457 -9.30929 -8.97916 -8.42797 -6.41135 1.40866 1.44630 1.60830 1.65282 2.19388 2.32276 2.40445 2.94564 3.68328 3.87981 3.96779 4.05437 4.33299 4.47189 4.57556 4.64074 4.69822 4.75882 4.78651 4.79182 4.87903 4.94712 5.07052 5.11438 5.32343 5.47713 5.59732 5.65265 5.77606 5.96296 6.33796 6.41322 6.49315 6.67052 6.77574 6.85735 7.33750 8.52836 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.012342 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.881475 B = 2268.122852 C = 2707.632229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.148 3.852 3 C -0.159 4.159 4 C -0.175 4.175 5 N -0.437 5.437 6 C -0.031 4.031 7 C -0.223 4.223 8 C -0.237 4.237 9 C 0.059 3.941 10 C 0.250 3.750 11 H 0.050 0.950 12 N -0.843 5.843 13 C -0.612 4.612 14 H 0.008 0.992 15 C -0.004 4.004 16 N -0.921 5.921 17 Si 1.064 2.936 18 H -0.288 1.288 19 H -0.256 1.256 20 H -0.246 1.246 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.188 0.812 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.330 0.670 34 H 0.329 0.671 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 9.049 2.396 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 C -0.217 4.217 4 C -0.232 4.232 5 N -0.114 5.114 6 C -0.160 4.160 7 C -0.248 4.248 8 C -0.262 4.262 9 C -0.055 4.055 10 C 0.139 3.861 11 H 0.067 0.933 12 N -0.372 5.372 13 C -0.652 4.652 14 H 0.026 0.974 15 C -0.206 4.206 16 N -0.556 5.556 17 Si 0.884 3.116 18 H -0.214 1.214 19 H -0.181 1.181 20 H -0.171 1.171 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.205 0.795 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.070 10.513 1.311 15.323 hybrid contribution 0.023 -2.567 0.640 2.646 sum -11.047 7.946 1.951 13.747 Atomic orbital electron populations 1.22079 0.90092 1.03282 1.04725 1.21000 0.96786 0.92530 0.83181 1.22300 1.01583 0.93956 1.03845 1.22478 1.04215 0.99508 0.97010 1.44435 1.05185 1.44571 1.17167 1.22033 0.97832 1.06127 0.90015 1.21010 0.92687 1.09112 1.02002 1.20574 0.97610 1.09619 0.98352 1.20424 0.85364 1.02749 0.96930 1.17705 0.85840 0.94108 0.88431 0.93274 1.59479 1.10646 1.37141 1.29981 1.22443 1.22926 0.97478 1.22334 0.97355 1.27042 0.92195 1.06583 0.94745 1.70952 1.38769 1.01074 1.44756 0.83795 0.77817 0.72283 0.77701 1.21356 1.18072 1.17061 0.90394 0.88312 0.92044 0.93487 0.88103 0.91587 0.94360 0.89242 0.90999 0.79540 0.83799 0.87081 0.85935 0.85744 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.36 71.98 0.53 -2.60 16 2 C 0.15 4.58 1.04 3.60 0.00 4.58 16 3 C -0.16 -4.48 8.48 71.98 0.61 -3.87 16 4 C -0.17 -6.24 8.31 71.98 0.60 -5.64 16 5 N -0.44 -16.53 2.62 -466.22 -1.22 -17.75 16 6 C -0.03 -1.06 10.35 83.21 0.86 -0.20 16 7 C -0.22 -8.38 10.86 22.14 0.24 -8.14 16 8 C -0.24 -10.57 10.21 22.14 0.23 -10.34 16 9 C 0.06 2.66 5.40 41.08 0.22 2.88 16 10 C 0.25 11.78 1.75 43.42 0.08 11.86 16 11 H 0.05 2.26 2.86 -2.38 -0.01 2.26 16 12 N -0.84 -37.72 8.99 -174.94 -1.57 -39.29 16 13 C -0.61 -33.77 7.02 25.60 0.18 -33.59 16 14 H 0.01 0.52 7.99 -2.91 -0.02 0.50 16 15 C 0.00 -0.25 5.38 84.65 0.46 0.21 16 16 N -0.92 -55.89 13.70 21.45 0.29 -55.60 16 17 Si 1.06 46.80 26.59 68.60 1.82 48.62 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.25 -9.66 5.99 99.48 0.60 -9.06 16 21 H 0.08 1.46 7.63 -2.39 -0.02 1.44 16 22 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 24 H 0.05 1.57 5.54 -2.39 -0.01 1.55 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 3.14 3.74 -2.39 -0.01 3.13 16 30 H 0.19 4.71 7.11 -2.91 -0.02 4.69 16 31 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.11 5.00 7.61 -2.91 -0.02 4.97 16 33 H 0.33 14.97 8.23 -89.69 -0.74 14.23 16 34 H 0.33 14.26 6.47 -89.70 -0.58 13.68 16 35 H 0.25 15.90 8.73 -92.71 -0.81 15.10 16 Total: -1.00 -65.81 270.96 2.96 -62.86 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: -0.37 Total: 46.02 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 4.00 Total: -44.86 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -2.50 Total: -112.64 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.82 Total: 48.62 kcal Total: -65.81 2.96 -62.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211784711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.363 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds