Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30944 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47002 * 270.00061 * 3 2 1 5 5 H 1.48496 * 109.47324 * 29.99662 * 3 2 1 6 6 H 1.48498 * 109.47156 * 150.00189 * 3 2 1 7 7 C 1.39784 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.41148 * 120.00257 * 0.02562 * 7 2 1 10 10 N 1.34764 * 126.20193 * 0.02562 * 9 7 2 11 11 C 1.32372 * 109.01028 * 180.02562 * 10 9 7 12 12 C 1.41026 * 132.06631 * 179.97438 * 11 10 9 13 13 C 1.36115 * 119.18672 * 180.02562 * 12 11 10 14 14 C 1.40198 * 120.17342 * 359.97438 * 13 12 11 15 15 N 1.30570 * 120.96018 * 359.97438 * 14 13 12 16 16 N 1.37559 * 108.90432 * 359.97438 * 11 10 9 17 17 C 1.35255 * 107.68483 * 0.02562 * 16 11 10 18 18 Cl 1.73604 * 126.59248 * 179.97438 * 17 16 11 19 19 H 0.96999 * 120.00536 * 0.02562 * 1 2 3 20 20 H 1.08010 * 120.40897 * 0.02562 * 12 11 10 21 21 H 1.07996 * 119.91167 * 179.97438 * 13 12 11 22 22 H 1.08003 * 119.52480 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.4909 2.0464 -1.4001 5 1 1.4409 2.6527 0.6999 6 1 3.5410 1.4402 0.7000 7 6 2.0084 -1.2106 0.0005 8 1 3.0884 -1.2105 0.0010 9 6 1.3027 -2.4330 0.0005 10 7 -0.0370 -2.5786 -0.0004 11 6 -0.3304 -3.8694 0.0005 12 6 -1.5607 -4.5588 0.0005 13 6 -1.5590 -5.9199 0.0022 14 6 -0.3460 -6.6230 0.0032 15 7 0.7966 -5.9912 0.0021 16 7 0.8398 -4.5925 0.0015 17 6 1.8667 -3.7122 0.0018 18 17 3.5596 -4.0968 0.0036 19 1 -0.4851 0.8400 -0.0004 20 1 -2.4930 -4.0133 -0.0007 21 1 -2.4944 -6.4597 0.0027 22 1 -0.3568 -7.7030 0.0049 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214703618.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = 84.772565 kcal Electronic energy + Delta-G solvation = -12511.155258 eV Core-core repulsion = 10093.387655 eV Total energy + Delta-G solvation = -2417.767603 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.67070 -38.53680 -37.22186 -35.32848 -34.12173 -31.77458 -30.02840 -27.80529 -24.54243 -23.52836 -22.09352 -19.50146 -18.39676 -17.94131 -16.66332 -16.55185 -16.44623 -15.33550 -14.75087 -14.40536 -13.65297 -13.58052 -13.09773 -12.90232 -12.61927 -12.52416 -12.11486 -11.95177 -11.55078 -11.46689 -11.23372 -10.21146 -9.86073 -8.77834 -8.43655 -6.37210 -0.20090 0.59035 0.91628 1.43131 1.44101 1.58919 1.75837 2.13780 2.28760 2.69379 3.46648 3.63619 3.79220 3.95334 4.37853 4.73099 5.07872 5.14530 5.16242 5.21495 5.37356 5.76469 6.25963 6.66639 6.82262 7.04445 7.56664 8.51156 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.010539 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.325921 B = 2656.234093 C = 3443.718786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.092 0.908 9 C 0.217 3.783 10 N -0.491 5.491 11 C 0.139 3.861 12 C -0.041 4.041 13 C -0.166 4.166 14 C 0.107 3.893 15 N -0.313 5.313 16 N -0.269 5.269 17 C -0.124 4.124 18 Cl -0.023 7.023 19 H 0.281 0.719 20 H 0.167 0.833 21 H 0.201 0.799 22 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -8.013 0.012 8.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.191 4.191 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.110 0.890 9 C 0.087 3.913 10 N -0.219 5.219 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.191 4.191 14 C -0.083 4.083 15 N -0.126 5.126 16 N -0.047 5.047 17 C -0.266 4.266 18 Cl 0.004 6.996 19 H 0.091 0.909 20 H 0.184 0.816 21 H 0.218 0.782 22 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -2.515 -7.571 0.015 7.977 hybrid contribution 0.393 0.239 -0.011 0.460 sum -2.122 -7.332 0.005 7.633 Atomic orbital electron populations 1.70154 1.08704 1.29471 1.33054 1.26855 0.95758 1.04329 0.92119 0.85079 0.78895 0.75484 0.79461 1.18682 1.19188 1.17919 1.19026 0.94478 0.88535 1.47468 0.89025 1.18627 0.87833 0.90178 0.94643 1.71675 1.13866 1.10768 1.25584 1.22355 0.88851 0.89453 1.09803 1.20894 0.94137 0.95137 0.96787 1.21858 1.01075 0.92639 1.03514 1.24791 0.87708 1.03093 0.92730 1.75346 1.28959 0.87367 1.20896 1.45977 1.07153 1.03273 1.48251 1.21461 0.81027 0.87971 1.36108 1.98188 1.08684 1.94550 1.98130 0.90888 0.81550 0.78201 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.19 11.93 21.80 0.26 -43.93 14 2 C 0.03 1.48 5.49 85.20 0.47 1.95 14 3 Si 0.99 39.80 29.56 68.60 2.03 41.83 14 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 14 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 14 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 14 7 C -0.46 -26.26 9.22 23.36 0.22 -26.04 14 8 H 0.09 4.95 7.76 -2.91 -0.02 4.93 14 9 C 0.22 12.76 6.67 39.79 0.27 13.02 14 10 N -0.49 -28.56 9.53 -186.32 -1.78 -30.34 14 11 C 0.14 6.88 7.85 134.03 1.05 7.93 14 12 C -0.04 -1.45 10.12 22.46 0.23 -1.23 14 13 C -0.17 -4.05 10.03 22.25 0.22 -3.83 14 14 C 0.11 2.84 11.30 85.36 0.96 3.81 14 15 N -0.31 -12.42 11.91 -56.94 -0.68 -13.10 14 16 N -0.27 -13.30 3.97 -180.52 -0.72 -14.02 14 17 C -0.12 -6.68 7.94 84.54 0.67 -6.01 14 18 Cl -0.02 -1.07 29.08 -2.72 -0.08 -1.15 14 19 H 0.28 14.17 8.30 -92.71 -0.77 13.41 14 20 H 0.17 5.05 8.06 -2.91 -0.02 5.02 14 21 H 0.20 2.48 8.06 -2.91 -0.02 2.46 14 22 H 0.24 3.29 8.06 -2.91 -0.02 3.27 14 Total: -1.00 -74.48 226.15 4.38 -70.10 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.26 Total: 1.00 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.09 Total: -10.39 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -2.91 Total: -101.38 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -74.48 4.38 -70.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214703618.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.873 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds