Wall clock time and date at job start Mon Mar 30 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86798 * 119.99543 * 2 1 4 4 H 1.48496 * 109.47338 * 239.99905 * 3 2 1 5 5 H 1.48506 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46812 * 120.00137 * 3 2 1 7 7 C 1.39896 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00374 * 160.04750 * 7 2 1 9 9 C 1.39802 * 119.99659 * 340.04377 * 7 2 1 10 10 C 1.40198 * 126.94169 * 146.87913 * 9 7 2 11 11 Cl 1.73604 * 125.97147 * 359.97438 * 10 9 7 12 12 N 1.32235 * 108.05915 * 180.02562 * 10 9 7 13 13 C 1.33383 * 110.10372 * 0.02562 * 12 10 9 14 14 N 1.33691 * 131.34016 * 180.02562 * 13 12 10 15 15 C 1.31492 * 121.06548 * 179.97438 * 14 13 12 16 16 C 1.39987 * 120.40625 * 359.97438 * 15 14 13 17 17 C 1.35877 * 119.17320 * 0.02562 * 16 15 14 18 18 N 1.36306 * 119.02848 * 359.97438 * 17 16 15 19 19 H 0.97003 * 120.00600 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.79666 * 180.27911 * 15 14 13 21 21 H 1.08004 * 120.41824 * 180.02562 * 16 15 14 22 22 H 1.07999 * 120.48046 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0980 1.6966 -1.2124 5 1 1.2791 2.7465 0.0006 6 1 3.0980 1.6964 1.2126 7 6 2.0099 -1.2115 -0.0005 8 1 3.0412 -1.2394 -0.3197 9 6 1.3739 -2.3860 0.4122 10 6 1.5979 -3.6814 -0.0750 11 17 2.7290 -4.1228 -1.3158 12 7 0.7963 -4.5082 0.5750 13 6 0.0599 -3.8328 1.4586 14 7 -0.8725 -4.2400 2.3259 15 6 -1.4825 -3.3853 3.1173 16 6 -1.1653 -2.0227 3.0674 17 6 -0.2197 -1.5945 2.1908 18 7 0.3948 -2.5050 1.3837 19 1 -0.4851 0.8400 0.0004 20 1 -2.2294 -3.7373 3.8135 21 1 -1.6660 -1.3206 3.7177 22 1 0.0412 -0.5480 2.1343 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214704203.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:45 Heat of formation + Delta-G solvation = 66.451751 kcal Electronic energy + Delta-G solvation = -12800.347103 eV Core-core repulsion = 10381.785049 eV Total energy + Delta-G solvation = -2418.562053 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.11352 -38.66786 -37.12774 -36.16340 -34.40967 -31.43788 -30.96428 -27.12107 -24.93469 -23.79838 -22.12377 -19.90029 -18.55691 -17.73506 -17.16143 -16.66531 -16.47484 -15.35148 -14.91766 -14.85754 -13.75779 -13.64322 -13.50404 -13.13969 -12.79085 -12.51895 -12.14920 -12.08095 -11.88554 -11.31609 -10.89741 -10.47261 -9.61205 -9.10673 -8.71136 -6.46069 0.03550 0.51863 1.18198 1.38636 1.41995 1.53210 1.97819 2.15138 2.17142 2.87068 2.99309 3.29715 3.95230 4.10755 4.39191 4.65571 4.90558 5.03691 5.13094 5.39249 5.67505 5.92791 6.19739 6.38282 6.56656 7.08924 7.33669 8.13304 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.015796 C = 0.009484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.288196 B = 1772.180495 C = 2951.617357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.040 3.960 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.182 3.818 10 C -0.043 4.043 11 Cl -0.018 7.018 12 N -0.489 5.489 13 C 0.272 3.728 14 N -0.477 5.477 15 C 0.146 3.854 16 C -0.236 4.236 17 C 0.145 3.855 18 N -0.420 5.420 19 H 0.300 0.700 20 H 0.216 0.784 21 H 0.196 0.804 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 5.747 5.308 7.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.176 4.176 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.123 0.877 9 C 0.069 3.931 10 C -0.201 4.201 11 Cl 0.009 6.991 12 N -0.213 5.213 13 C -0.071 4.071 14 N -0.190 5.190 15 C -0.041 4.041 16 C -0.259 4.259 17 C 0.015 3.985 18 N -0.104 5.104 19 H 0.111 0.889 20 H 0.232 0.768 21 H 0.213 0.787 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.317 3.980 4.856 6.416 hybrid contribution 0.591 1.913 -0.487 2.060 sum -0.726 5.893 4.369 7.372 Atomic orbital electron populations 1.69933 1.08862 1.32052 1.34795 1.26784 0.95483 1.04393 0.90939 0.85075 0.78736 0.74634 0.80441 1.18512 1.18750 1.17980 1.18743 0.99997 0.90046 1.41176 0.87684 1.18530 0.89950 0.94588 0.90045 1.20992 1.05166 0.90296 1.03633 1.98196 1.57465 1.93324 1.50068 1.69122 1.09392 1.33704 1.09100 1.20960 1.03455 0.78935 1.03800 1.67476 1.07299 1.38476 1.05769 1.23734 0.96468 0.89431 0.94514 1.22043 1.01276 0.98809 1.03793 1.22552 0.92378 0.95728 0.87866 1.43641 1.30921 1.09148 1.26661 0.88949 0.76756 0.78679 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -37.82 10.56 21.83 0.23 -37.59 14 2 C 0.04 1.77 4.55 85.21 0.39 2.15 14 3 Si 0.99 33.21 29.61 68.60 2.03 35.24 14 4 H -0.26 -8.77 7.11 99.48 0.71 -8.07 14 5 H -0.26 -8.22 7.11 99.48 0.71 -7.52 14 6 H -0.26 -8.31 7.11 99.48 0.71 -7.61 14 7 C -0.47 -23.08 9.09 23.05 0.21 -22.87 14 8 H 0.11 5.03 7.92 -2.91 -0.02 5.01 14 9 C 0.18 9.74 6.27 38.95 0.24 9.99 14 10 C -0.04 -2.33 7.83 85.11 0.67 -1.66 14 11 Cl -0.02 -0.85 29.14 -2.72 -0.08 -0.93 14 12 N -0.49 -27.71 11.23 -187.32 -2.10 -29.82 14 13 C 0.27 14.42 8.90 261.17 2.32 16.75 14 14 N -0.48 -21.73 10.47 -196.91 -2.06 -23.79 14 15 C 0.15 4.81 11.26 85.17 0.96 5.77 14 16 C -0.24 -7.38 10.07 22.15 0.22 -7.16 14 17 C 0.15 5.99 9.36 83.45 0.78 6.77 14 18 N -0.42 -21.22 2.91 -348.95 -1.01 -22.24 14 19 H 0.30 12.11 8.30 -92.71 -0.77 11.34 14 20 H 0.22 4.50 8.06 -2.91 -0.02 4.48 14 21 H 0.20 3.92 8.06 -2.91 -0.02 3.89 14 22 H 0.16 6.44 6.08 -2.91 -0.02 6.42 14 Total: -1.00 -65.49 220.98 4.06 -61.43 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.26 Total: 7.95 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.79 Total: 9.74 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.95 Total: -113.43 kcal Atomic # 14 Polarization: 33.21 SS G_CDS: 2.03 Total: 35.24 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -65.49 4.06 -61.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214704203.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.879 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds