Wall clock time and date at job start Mon Mar 30 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31654 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48491 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46911 * 299.99760 * 3 2 1 6 6 H 1.48497 * 109.47367 * 59.99255 * 3 2 1 7 7 C 1.38696 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99594 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.76205 * 99.99865 * 184.99573 * 9 7 2 11 11 C 1.38991 * 120.12160 * 352.33675 * 10 9 7 12 12 C 1.38089 * 119.97198 * 180.02562 * 11 10 9 13 13 C 1.38387 * 120.23110 * 359.97438 * 12 11 10 14 14 C 1.38225 * 120.25380 * 359.97438 * 13 12 11 15 15 C 1.38681 * 120.01348 * 0.02562 * 14 13 12 16 16 N 1.39939 * 120.11080 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00269 * 33.94201 * 16 15 14 18 18 O 1.21297 * 119.99599 * 355.57242 * 17 16 15 19 19 H 0.96996 * 119.99723 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.01523 * 359.97438 * 11 10 9 21 21 H 1.08002 * 119.88057 * 180.02562 * 12 11 10 22 22 H 1.08004 * 119.87784 * 179.97438 * 13 12 11 23 23 H 1.07995 * 119.99564 * 179.74713 * 14 13 12 24 24 H 0.97002 * 119.99789 * 213.93712 * 16 15 14 25 25 H 1.07992 * 120.00370 * 175.58531 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 3.7105 1.3463 0.0006 5 1 1.8919 2.3963 -1.2126 6 1 1.8918 2.3965 1.2124 7 6 2.0100 -1.2012 0.0005 8 1 3.0900 -1.2011 0.0010 9 16 1.1290 -2.7270 0.0005 10 6 2.4730 -3.8563 0.1524 11 6 3.7824 -3.3973 0.0709 12 6 4.8333 -4.2851 0.1899 13 6 4.5882 -5.6321 0.3907 14 6 3.2897 -6.0988 0.4742 15 6 2.2265 -5.2163 0.3562 16 7 0.9112 -5.6866 0.4400 17 6 0.6152 -6.7193 1.2539 18 8 1.5008 -7.2928 1.8524 19 1 -0.4849 0.8400 -0.0004 20 1 3.9778 -2.3468 -0.0861 21 1 5.8502 -3.9267 0.1268 22 1 5.4144 -6.3216 0.4825 23 1 3.1031 -7.1515 0.6270 24 1 0.2124 -5.2693 -0.0877 25 1 -0.4102 -7.0363 1.3730 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215763911.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:47 Heat of formation + Delta-G solvation = -30.616067 kcal Electronic energy + Delta-G solvation = -12442.925044 eV Core-core repulsion = 10125.737864 eV Total energy + Delta-G solvation = -2317.187180 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.10612 -38.98852 -35.66182 -34.72154 -31.88549 -30.48094 -27.86196 -24.56160 -23.74634 -22.06588 -20.17425 -18.85088 -18.02787 -17.55543 -16.98257 -16.07084 -15.77784 -15.47634 -14.84807 -14.60593 -14.55622 -13.85667 -13.37491 -13.00154 -12.85797 -12.81796 -12.11770 -11.65578 -11.41164 -11.25245 -10.78987 -10.64413 -10.33469 -9.19945 -8.49939 -8.35428 -6.23652 0.39989 0.54014 1.27879 1.37443 1.46434 1.60740 1.78344 2.17631 2.42111 2.85506 2.98950 3.17097 4.05329 4.14935 4.30972 4.53786 4.68170 4.75230 5.05565 5.35033 5.44475 5.49777 5.65925 5.71935 6.12341 6.21081 6.52725 6.95836 7.18319 8.59035 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.038425 B = 0.008699 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.520330 B = 3218.014869 C = 3851.021741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.095 0.905 9 S -0.009 6.009 10 C -0.128 4.128 11 C -0.147 4.147 12 C -0.115 4.115 13 C -0.134 4.134 14 C -0.115 4.115 15 C 0.117 3.883 16 N -0.667 5.667 17 C 0.492 3.508 18 O -0.587 6.587 19 H 0.276 0.724 20 H 0.123 0.877 21 H 0.144 0.856 22 H 0.150 0.850 23 H 0.137 0.863 24 H 0.419 0.581 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -8.028 -0.732 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.712 4.712 8 H 0.113 0.887 9 S 0.242 5.758 10 C -0.244 4.244 11 C -0.173 4.173 12 C -0.136 4.136 13 C -0.157 4.157 14 C -0.137 4.137 15 C 0.014 3.986 16 N -0.314 5.314 17 C 0.264 3.736 18 O -0.464 6.464 19 H 0.085 0.915 20 H 0.141 0.859 21 H 0.162 0.838 22 H 0.167 0.833 23 H 0.155 0.845 24 H 0.257 0.743 25 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.891 -8.381 -0.380 8.600 hybrid contribution 1.155 1.588 -0.175 1.971 sum 3.046 -6.793 -0.555 7.466 Atomic orbital electron populations 1.70101 1.07508 1.29129 1.46958 1.26017 0.96016 1.03025 0.92938 0.84981 0.78685 0.76559 0.78348 1.18499 1.19495 1.19766 1.23664 0.96360 0.91733 1.59483 0.88699 1.82876 1.08038 0.98133 1.86739 1.22537 1.00036 0.96178 1.05661 1.21386 0.91842 1.00664 1.03371 1.21281 0.98958 0.93372 0.99942 1.21248 0.96542 0.95776 1.02088 1.21244 0.91924 0.99576 1.00971 1.17508 0.86146 0.90310 1.04589 1.44204 1.08112 1.34665 1.44376 1.23894 0.96634 0.77441 0.75649 1.90653 1.52587 1.55407 1.47772 0.91465 0.85925 0.83832 0.83275 0.84501 0.74343 0.78369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.52 13.22 21.63 0.29 -50.24 15 2 C 0.03 1.39 5.49 84.83 0.47 1.86 15 3 Si 0.99 41.62 29.55 68.60 2.03 43.65 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 7 C -0.57 -30.63 9.07 67.93 0.62 -30.01 15 8 H 0.10 4.97 4.84 -2.91 -0.01 4.96 15 9 S -0.01 -0.45 20.52 -56.49 -1.16 -1.61 15 10 C -0.13 -5.62 6.11 22.81 0.14 -5.48 15 11 C -0.15 -6.16 9.25 22.42 0.21 -5.96 15 12 C -0.12 -3.91 10.03 22.27 0.22 -3.69 15 13 C -0.13 -4.27 10.04 22.30 0.22 -4.05 15 14 C -0.12 -4.11 8.69 22.37 0.19 -3.92 15 15 C 0.12 4.50 6.33 38.31 0.24 4.74 15 16 N -0.67 -20.87 5.04 -315.25 -1.59 -22.46 15 17 C 0.49 13.12 12.49 129.79 1.62 14.74 15 18 O -0.59 -20.63 14.55 -3.08 -0.04 -20.67 15 19 H 0.28 14.34 8.31 -92.71 -0.77 13.57 15 20 H 0.12 5.43 4.97 -2.91 -0.01 5.41 15 21 H 0.14 3.88 8.06 -2.91 -0.02 3.86 15 22 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 23 H 0.14 4.73 6.15 -2.91 -0.02 4.71 15 24 H 0.42 11.90 8.05 -92.71 -0.75 11.15 15 25 H 0.20 2.78 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -67.43 238.22 3.94 -63.49 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.49 Total: 19.60 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.93 Total: -31.76 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.30 Total: -72.69 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.16 Total: -1.61 kcal Total: -67.43 3.94 -63.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215763911.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.872 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds