Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47023 * 2 1 4 4 C 1.52996 * 109.47594 * 239.99827 * 2 1 3 5 5 C 1.50699 * 109.47048 * 59.99870 * 4 2 1 6 6 H 1.08003 * 119.99878 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99998 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47240 * 60.00192 * 9 7 5 11 11 H 1.48504 * 109.46946 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47303 * 299.99907 * 9 7 5 13 13 C 1.53010 * 109.46900 * 119.99733 * 2 1 3 14 14 N 1.46898 * 109.47047 * 300.00209 * 13 2 1 15 15 N 1.36602 * 110.99773 * 179.97438 * 14 13 2 16 16 C 1.36341 * 125.63574 * 359.69503 * 15 14 13 17 17 C 1.34856 * 108.21893 * 180.26225 * 16 15 14 18 18 C 1.40893 * 107.41387 * 359.97438 * 17 16 15 19 19 C 1.34845 * 107.42021 * 0.02562 * 18 17 16 20 20 H 1.08992 * 109.46950 * 299.99978 * 1 2 3 21 21 H 1.09001 * 109.46726 * 60.00195 * 1 2 3 22 22 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47193 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47433 * 299.99910 * 3 2 1 25 25 H 1.09004 * 109.47432 * 59.99847 * 3 2 1 26 26 H 1.09000 * 109.47559 * 180.02562 * 4 2 1 27 27 H 1.08999 * 109.46932 * 300.00016 * 4 2 1 28 28 H 0.97005 * 119.99638 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46922 * 180.02562 * 13 2 1 30 30 H 1.09001 * 109.46892 * 60.00622 * 13 2 1 31 31 H 1.00900 * 111.00011 * 56.04546 * 14 13 2 32 32 H 1.07998 * 125.89441 * 0.22507 * 16 15 14 33 33 H 1.07999 * 126.28963 * 179.97438 * 17 16 15 34 34 H 1.07995 * 126.28880 * 179.97438 * 18 17 16 35 35 H 1.08006 * 125.89233 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 2.6259 -1.5521 -3.8525 9 14 1.2485 0.3987 -5.2571 10 1 1.7445 1.7984 -5.2572 11 1 1.7435 -0.3014 -6.4696 12 1 -0.2365 0.3998 -5.2571 13 6 2.0400 -0.7212 1.2494 14 7 1.5503 -0.0287 2.4487 15 7 1.9878 -0.6484 3.5847 16 6 2.7693 -1.7647 3.6300 17 6 2.9846 -2.0765 4.9242 18 6 2.3118 -1.1172 5.7066 19 6 1.7106 -0.2561 4.8608 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1301 -0.7216 -1.2489 27 1 1.6768 -1.7489 -1.2491 28 1 2.8597 -1.8839 -4.7335 29 1 3.1300 -0.7209 1.2496 30 1 1.6767 -1.7489 1.2493 31 1 0.5437 0.0414 2.4402 32 1 3.1498 -2.3063 2.7766 33 1 3.5659 -2.9086 5.2931 34 1 2.2823 -1.0790 6.7855 35 1 1.1131 0.5976 5.1450 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229698724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 48.119325 kcal Electronic energy + Delta-G solvation = -15169.328801 eV Core-core repulsion = 12782.187824 eV Total energy + Delta-G solvation = -2387.140977 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.30010 -39.13200 -35.93239 -34.28669 -30.39317 -29.64912 -28.67488 -28.02419 -26.78815 -24.64857 -21.61478 -21.03969 -19.58408 -19.08369 -18.38362 -17.11943 -16.52815 -15.70194 -15.30124 -15.17150 -14.74476 -14.45071 -14.08859 -13.97961 -13.65372 -13.17573 -12.93389 -12.85933 -12.77031 -12.63875 -12.34268 -12.26402 -12.03403 -11.59334 -11.12647 -10.96317 -10.87571 -10.52647 -9.11009 -8.99509 -8.16617 -6.24072 1.36680 1.41552 1.43155 1.50384 1.63428 2.14302 2.42773 3.18129 3.31152 3.83507 3.92992 4.17459 4.32836 4.37844 4.49474 4.58846 4.69049 4.72573 4.94299 4.96149 5.10304 5.12765 5.27575 5.40296 5.42449 5.45451 5.49761 5.51651 5.59048 5.76650 5.86975 6.10381 6.27993 6.36931 6.89907 7.04782 7.43791 8.95573 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.062038 B = 0.005623 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.225356 B = 4978.192707 C = 5231.046840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C -0.114 4.114 4 C 0.040 3.960 5 C -0.517 4.517 6 H 0.069 0.931 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.064 3.936 14 N -0.445 5.445 15 N -0.298 5.298 16 C -0.063 4.063 17 C -0.206 4.206 18 C -0.212 4.212 19 C -0.015 4.015 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.041 0.959 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.067 0.933 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.360 0.640 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 2.837 14.547 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 C -0.171 4.171 4 C 0.003 3.997 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.064 4.064 14 N -0.168 5.168 15 N -0.059 5.059 16 C -0.195 4.195 17 C -0.232 4.232 18 C -0.237 4.237 19 C -0.146 4.146 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.178 0.822 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.179 3.382 14.103 14.847 hybrid contribution -0.432 -0.803 -1.410 1.679 sum -3.611 2.580 12.693 13.447 Atomic orbital electron populations 1.21777 0.93970 1.01016 1.01903 1.20457 0.96265 0.96174 0.91935 1.21593 0.99513 0.94849 1.01185 1.18991 0.94364 0.94183 0.92183 1.21545 1.30636 1.12109 0.91194 0.91251 1.25898 0.95589 0.95822 1.02573 1.70096 1.38668 1.24825 1.24204 0.85631 0.78987 0.78771 0.78466 1.19325 1.21512 1.19168 1.22389 1.00552 0.95726 0.87765 1.62274 1.17788 1.43835 0.92929 1.43570 1.38705 1.20616 1.03052 1.22170 1.04983 0.92197 1.00133 1.21090 1.06944 1.03226 0.91899 1.21139 1.04846 0.97897 0.99865 1.22168 1.08077 1.04048 0.80295 0.91305 0.92374 0.93981 0.94829 0.93206 0.91372 0.99428 0.99307 0.93107 0.91050 0.94086 0.81628 0.82485 0.83160 0.82209 0.79669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.89 71.98 0.57 -3.72 16 2 C -0.05 -1.75 0.60 -52.18 -0.03 -1.78 16 3 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.52 -27.53 7.65 25.60 0.20 -27.33 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 13 C 0.06 2.12 3.59 86.31 0.31 2.43 16 14 N -0.44 -12.50 6.46 -186.70 -1.21 -13.70 16 15 N -0.30 -8.39 3.68 -194.56 -0.72 -9.11 16 16 C -0.06 -1.82 10.12 83.22 0.84 -0.97 16 17 C -0.21 -5.27 10.86 22.14 0.24 -5.03 16 18 C -0.21 -4.93 10.86 22.14 0.24 -4.69 16 19 C -0.01 -0.35 11.68 83.21 0.97 0.62 16 20 H 0.07 1.77 6.57 -2.39 -0.02 1.76 16 21 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 25 H 0.07 2.07 7.60 -2.38 -0.02 2.05 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.26 14.85 8.31 -92.70 -0.77 14.07 16 29 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 30 H 0.04 1.38 7.69 -2.39 -0.02 1.37 16 31 H 0.36 8.84 6.98 -210.55 -1.47 7.37 16 32 H 0.16 4.46 6.99 -2.91 -0.02 4.44 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -61.92 282.62 4.48 -57.44 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.41 Total: 17.36 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.50 Total: -41.46 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -1.64 Total: -78.66 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.92 4.48 -57.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229698724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.561 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds