Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48506 * 109.46655 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47299 * 299.99964 * 3 2 1 6 6 H 1.48498 * 109.46864 * 60.00274 * 3 2 1 7 7 C 1.40406 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.40355 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.33168 * 126.65547 * 180.24567 * 9 7 2 11 11 C 1.34469 * 105.47746 * 180.12056 * 10 9 7 12 12 C 1.47817 * 126.23508 * 179.90763 * 11 10 9 13 13 C 1.35089 * 126.10317 * 179.71521 * 12 11 10 14 14 N 1.31328 * 114.24458 * 180.02562 * 13 12 11 15 15 C 1.29204 * 117.29011 * 0.02562 * 14 13 12 16 16 S 1.70945 * 110.35740 * 359.97438 * 15 14 13 17 17 N 1.31509 * 107.52209 * 359.64715 * 11 10 9 18 18 O 1.21269 * 110.48917 * 0.22552 * 17 11 10 19 19 H 0.97007 * 119.99944 * 359.97438 * 1 2 3 20 20 H 1.08008 * 122.87807 * 0.02651 * 13 12 11 21 21 H 1.08002 * 124.82040 * 179.73409 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3463 0.0006 5 1 1.8806 2.3965 -1.2124 6 1 1.8806 2.3964 1.2125 7 6 2.0073 -1.2160 -0.0005 8 1 3.0873 -1.2160 -0.0010 9 6 1.3055 -2.4315 -0.0016 10 7 1.8332 -3.6542 0.0023 11 6 0.7856 -4.4972 -0.0034 12 6 0.8523 -5.9738 -0.0040 13 6 -0.2021 -6.8183 -0.0044 14 7 0.1256 -8.0900 -0.0044 15 6 1.3853 -8.3773 -0.0034 16 16 2.3213 -6.9469 -0.0032 17 7 -0.3091 -3.7684 -0.0028 18 8 -0.0329 -2.5875 -0.0018 19 1 -0.4850 0.8401 0.0004 20 1 -1.2267 -6.4768 -0.0048 21 1 1.7894 -9.3788 0.0008 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236240924.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = 91.562757 kcal Electronic energy + Delta-G solvation = -12217.660901 eV Core-core repulsion = 9802.231449 eV Total energy + Delta-G solvation = -2415.429452 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.016 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.17109 -39.21169 -34.25509 -33.97981 -31.27308 -29.17469 -26.60554 -25.47572 -22.07573 -21.81998 -19.68761 -18.41218 -17.30064 -16.01408 -15.59213 -15.15195 -14.77185 -14.08213 -13.63068 -13.41184 -13.11539 -11.83037 -11.72945 -11.56271 -11.20429 -10.61782 -10.56544 -10.28292 -10.01300 -9.44229 -9.16991 -9.04560 -8.79056 -8.03290 -7.20019 -5.16710 0.80311 1.58498 2.08399 2.68463 2.90845 2.91427 2.98795 3.31402 3.66004 3.96585 4.53037 4.83526 4.89602 5.20977 5.45446 5.58761 6.32988 6.42775 6.73974 7.03141 7.71847 7.91747 7.93689 8.13878 8.31445 9.78618 10.12182 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.076874 B = 0.006767 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.142629 B = 4136.470625 C = 4490.771036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.069 3.931 3 Si 0.939 3.061 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.410 4.410 8 H 0.116 0.884 9 C 0.306 3.694 10 N -0.605 5.605 11 C 0.216 3.784 12 C -0.110 4.110 13 C 0.042 3.958 14 N -0.469 5.469 15 C -0.019 4.019 16 S 0.188 5.812 17 N -0.442 5.442 18 O 0.058 5.942 19 H 0.294 0.706 20 H 0.180 0.820 21 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -5.110 -0.011 6.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.448 4.448 8 H 0.134 0.866 9 C 0.116 3.884 10 N -0.350 5.350 11 C -0.056 4.056 12 C -0.233 4.233 13 C -0.113 4.113 14 N -0.182 5.182 15 C -0.315 4.315 16 S 0.439 5.561 17 N -0.169 5.169 18 O 0.006 5.994 19 H 0.105 0.895 20 H 0.197 0.803 21 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.803 -5.854 -0.005 6.981 hybrid contribution -0.604 1.182 -0.003 1.327 sum 3.200 -4.672 -0.008 5.663 Atomic orbital electron populations 1.69641 1.07824 1.31051 1.30194 1.26234 0.95177 1.02468 0.91756 0.85739 0.80573 0.78578 0.79006 1.17744 1.19238 1.19243 1.18664 0.95196 0.85301 1.45630 0.86586 1.24123 0.79640 0.93826 0.90789 1.72479 1.27066 0.98437 1.37025 1.21979 0.87541 0.91961 1.04124 1.23046 0.95958 0.93873 1.10438 1.21980 1.00581 0.85838 1.02926 1.66230 1.17434 1.19413 1.15150 1.28444 0.92379 1.04140 1.06568 1.84024 1.09320 0.96919 1.65787 1.74735 1.23147 0.90948 1.28073 1.85530 1.25850 1.17434 1.70602 0.89478 0.80334 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.73 12.05 55.57 0.67 -18.06 14 2 C 0.07 1.62 5.50 -17.29 -0.10 1.52 14 3 Si 0.94 16.92 29.56 -169.99 -5.03 11.90 14 4 H -0.25 -4.48 7.11 56.52 0.40 -4.08 14 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 6 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 7 C -0.41 -10.48 9.48 -37.97 -0.36 -10.84 14 8 H 0.12 2.78 7.85 -52.49 -0.41 2.37 14 9 C 0.31 8.51 7.80 -16.32 -0.13 8.39 14 10 N -0.61 -16.40 11.64 -11.66 -0.14 -16.54 14 11 C 0.22 5.53 8.02 -156.44 -1.25 4.27 14 12 C -0.11 -2.32 6.52 -36.78 -0.24 -2.56 14 13 C 0.04 0.81 11.28 -18.89 -0.21 0.60 14 14 N -0.47 -8.09 10.52 -15.48 -0.16 -8.25 14 15 C -0.02 -0.27 12.22 51.66 0.63 0.36 14 16 S 0.19 3.07 23.21 -107.50 -2.50 0.58 14 17 N -0.44 -11.97 12.17 31.46 0.38 -11.59 14 18 O 0.06 1.65 9.71 15.15 0.15 1.79 14 19 H 0.29 6.36 8.29 -40.82 -0.34 6.02 14 20 H 0.18 3.31 8.06 -52.48 -0.42 2.89 14 21 H 0.20 1.88 8.06 -52.49 -0.42 1.46 14 LS Contribution 223.27 15.07 3.36 3.36 Total: -1.00 -29.74 223.27 -5.31 -35.04 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -0.39 Total: 0.04 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.66 Total: 1.73 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.75 Total: -54.44 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.15 Total: 1.79 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.50 Total: 0.58 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.74 -5.31 -35.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236240924.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.608 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds