Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48506 * 109.46655 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47299 * 299.99964 * 3 2 1 6 6 H 1.48498 * 109.46864 * 60.00274 * 3 2 1 7 7 C 1.40406 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.40355 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.33168 * 126.65547 * 180.24567 * 9 7 2 11 11 C 1.34469 * 105.47746 * 180.12056 * 10 9 7 12 12 C 1.47817 * 126.23508 * 179.90763 * 11 10 9 13 13 C 1.35089 * 126.10317 * 179.71521 * 12 11 10 14 14 N 1.31328 * 114.24458 * 180.02562 * 13 12 11 15 15 C 1.29204 * 117.29011 * 0.02562 * 14 13 12 16 16 S 1.70945 * 110.35740 * 359.97438 * 15 14 13 17 17 N 1.31509 * 107.52209 * 359.64715 * 11 10 9 18 18 O 1.21269 * 110.48917 * 0.22552 * 17 11 10 19 19 H 0.97007 * 119.99944 * 359.97438 * 1 2 3 20 20 H 1.08008 * 122.87807 * 0.02651 * 13 12 11 21 21 H 1.08002 * 124.82040 * 179.73409 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3463 0.0006 5 1 1.8806 2.3965 -1.2124 6 1 1.8806 2.3964 1.2125 7 6 2.0073 -1.2160 -0.0005 8 1 3.0873 -1.2160 -0.0010 9 6 1.3055 -2.4315 -0.0016 10 7 1.8332 -3.6542 0.0023 11 6 0.7856 -4.4972 -0.0034 12 6 0.8523 -5.9738 -0.0040 13 6 -0.2021 -6.8183 -0.0044 14 7 0.1256 -8.0900 -0.0044 15 6 1.3853 -8.3773 -0.0034 16 16 2.3213 -6.9469 -0.0032 17 7 -0.3091 -3.7684 -0.0028 18 8 -0.0329 -2.5875 -0.0018 19 1 -0.4850 0.8401 0.0004 20 1 -1.2267 -6.4768 -0.0048 21 1 1.7894 -9.3788 0.0008 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236240924.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = 68.971949 kcal Electronic energy + Delta-G solvation = -12218.640511 eV Core-core repulsion = 9802.231449 eV Total energy + Delta-G solvation = -2416.409063 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.016 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.11899 -40.60461 -36.14840 -35.87914 -33.08670 -30.82411 -28.55752 -26.90350 -23.89614 -23.66563 -21.30547 -19.99002 -18.88583 -18.01569 -17.43754 -16.75933 -16.47371 -15.48572 -15.09126 -14.88964 -14.68165 -13.67640 -13.49521 -13.11778 -12.66720 -12.47801 -12.24613 -11.94889 -11.71660 -11.17945 -10.80547 -10.76200 -10.15854 -9.75441 -9.00130 -7.17077 -0.61275 0.21897 0.75032 0.93803 1.41470 1.42800 1.63760 1.72878 2.14600 2.17300 2.97313 2.97621 3.23438 3.45637 3.89975 4.30989 4.59112 4.90114 4.99966 5.20119 5.75252 5.96726 6.16992 6.38058 6.57362 8.00456 8.14092 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.076874 B = 0.006767 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.142629 B = 4136.470625 C = 4490.771036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.027 3.973 3 Si 1.025 2.975 4 H -0.246 1.246 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.425 4.425 8 H 0.127 0.873 9 C 0.273 3.727 10 N -0.628 5.628 11 C 0.228 3.772 12 C -0.179 4.179 13 C 0.064 3.936 14 N -0.491 5.491 15 C 0.026 3.974 16 S 0.220 5.780 17 N -0.474 5.474 18 O 0.023 5.977 19 H 0.308 0.692 20 H 0.174 0.826 21 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -5.672 -0.010 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.195 4.195 3 Si 0.841 3.159 4 H -0.169 1.169 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.144 0.856 9 C 0.085 3.915 10 N -0.374 5.374 11 C -0.045 4.045 12 C -0.302 4.302 13 C -0.093 4.093 14 N -0.204 5.204 15 C -0.270 4.270 16 S 0.473 5.527 17 N -0.208 5.208 18 O -0.023 6.023 19 H 0.119 0.881 20 H 0.191 0.809 21 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.347 -6.391 -0.005 8.333 hybrid contribution -1.051 1.167 -0.003 1.571 sum 4.296 -5.224 -0.008 6.763 Atomic orbital electron populations 1.69699 1.09803 1.33169 1.29244 1.27437 0.95940 1.05925 0.90203 0.84527 0.79098 0.72702 0.79614 1.16859 1.18088 1.18099 1.19230 0.95929 0.85804 1.45190 0.85576 1.24746 0.79964 0.94991 0.91762 1.72433 1.27783 0.98594 1.38599 1.22582 0.86663 0.93917 1.01296 1.23131 0.99243 0.92230 1.15572 1.22028 1.00223 0.86555 1.00487 1.66352 1.18813 1.17870 1.17393 1.29456 0.91054 1.05625 1.00829 1.83857 1.07287 0.96463 1.65060 1.74633 1.24068 0.90805 1.31268 1.85458 1.26137 1.18241 1.72420 0.88053 0.80913 0.73008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.66 12.05 21.90 0.26 -39.39 14 2 C 0.03 1.27 5.50 85.41 0.47 1.74 14 3 Si 1.02 33.49 29.56 68.60 2.03 35.52 14 4 H -0.25 -7.65 7.11 99.48 0.71 -6.94 14 5 H -0.26 -7.94 7.11 99.48 0.71 -7.23 14 6 H -0.26 -7.94 7.11 99.48 0.71 -7.24 14 7 C -0.42 -22.14 9.48 23.31 0.22 -21.92 14 8 H 0.13 6.10 7.85 -2.91 -0.02 6.08 14 9 C 0.27 15.84 7.80 85.06 0.66 16.50 14 10 N -0.63 -35.32 11.64 -305.03 -3.55 -38.87 14 11 C 0.23 12.13 8.02 137.13 1.10 13.23 14 12 C -0.18 -7.59 6.52 24.08 0.16 -7.44 14 13 C 0.06 2.43 11.28 84.04 0.95 3.38 14 14 N -0.49 -15.69 10.52 -202.88 -2.13 -17.83 14 15 C 0.03 0.64 12.22 130.63 1.60 2.23 14 16 S 0.22 6.76 23.21 -56.49 -1.31 5.44 14 17 N -0.47 -27.09 12.17 -55.91 -0.68 -27.77 14 18 O 0.02 1.37 9.71 64.29 0.62 1.99 14 19 H 0.31 13.33 8.29 -92.70 -0.77 12.56 14 20 H 0.17 6.58 8.06 -2.91 -0.02 6.56 14 21 H 0.25 3.16 8.06 -2.91 -0.02 3.13 14 Total: -1.00 -67.93 223.27 1.68 -66.25 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.28 Total: 6.92 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.16 Total: 7.73 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.10 Total: -123.86 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.62 Total: 1.99 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.31 Total: 5.44 kcal Total: -67.93 1.68 -66.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236240924.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.224 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds