Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.45110 * 2 1 4 4 C 1.55927 * 110.40468 * 237.61365 * 2 1 3 5 5 H 1.09002 * 115.92254 * 80.36140 * 4 2 1 6 6 C 1.55931 * 104.49463 * 311.48580 * 4 2 1 7 7 C 1.54580 * 104.64537 * 289.72215 * 6 4 2 8 8 C 1.55929 * 104.64271 * 359.97438 * 7 6 4 9 9 H 1.08999 * 115.92155 * 199.16061 * 8 7 6 10 10 C 1.56943 * 100.65379 * 207.43154 * 4 2 1 11 11 C 1.54582 * 110.40412 * 122.39253 * 2 1 3 12 12 H 1.08996 * 110.40016 * 359.87935 * 11 2 1 13 13 C 1.52999 * 110.39875 * 237.58353 * 11 2 1 14 14 C 1.53002 * 109.46836 * 174.99803 * 13 11 2 15 15 C 1.50712 * 109.47065 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99592 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99976 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46749 * 269.99571 * 19 17 15 21 21 H 1.48502 * 109.47338 * 29.99300 * 19 17 15 22 22 H 1.48497 * 109.47090 * 149.99483 * 19 17 15 23 23 H 1.08998 * 109.47031 * 306.71786 * 1 2 3 24 24 H 1.09000 * 109.47174 * 66.71723 * 1 2 3 25 25 H 1.09001 * 109.46906 * 186.71643 * 1 2 3 26 26 H 1.09004 * 109.47230 * 182.39070 * 3 2 1 27 27 H 1.09003 * 109.47245 * 302.38728 * 3 2 1 28 28 H 1.08998 * 109.47065 * 62.38932 * 3 2 1 29 29 H 1.08999 * 110.40374 * 48.51663 * 6 4 2 30 30 H 1.09004 * 110.40107 * 170.92698 * 6 4 2 31 31 H 1.08995 * 110.40404 * 118.79317 * 7 6 4 32 32 H 1.09000 * 110.40041 * 241.21016 * 7 6 4 33 33 H 1.09000 * 112.02996 * 170.30197 * 10 4 2 34 34 H 1.09004 * 112.02511 * 296.82372 * 10 4 2 35 35 H 1.09001 * 109.47663 * 54.99567 * 13 11 2 36 36 H 1.09001 * 109.47477 * 294.99322 * 13 11 2 37 37 H 1.08997 * 109.47569 * 60.00102 * 14 13 11 38 38 H 1.08997 * 109.47075 * 299.99364 * 14 13 11 39 39 H 0.96996 * 120.00081 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0736 -0.7828 -1.2341 5 1 2.0859 -0.2365 -2.1773 6 6 1.2723 -2.1205 -1.2317 7 6 1.8112 -2.8966 -0.0083 8 6 2.8878 -1.9550 0.6129 9 1 3.6088 -2.4295 1.2786 10 6 3.4578 -1.2728 -0.6801 11 6 2.0689 -0.7762 1.2234 12 1 1.2439 -1.1559 1.8260 13 6 2.9753 0.1219 2.0677 14 6 3.3958 -0.6252 3.3349 15 6 4.2892 0.2591 4.1663 16 1 4.5323 1.2545 3.8251 17 6 4.7953 -0.2023 5.3630 18 7 5.5753 0.5692 6.0882 19 14 4.3742 -1.9238 5.9534 20 1 3.1406 -1.8759 6.7788 21 1 4.1518 -2.8085 4.7816 22 1 5.4954 -2.4553 6.7692 23 1 -0.3633 0.6144 0.8238 24 1 -0.3633 0.4062 -0.9440 25 1 -0.3633 -1.0206 0.1202 26 1 3.1536 1.4152 -0.0429 27 1 1.6757 1.9664 -0.8678 28 1 1.7452 1.9404 0.9106 29 1 0.2062 -1.9246 -1.1180 30 1 1.4613 -2.6783 -2.1489 31 1 1.0100 -3.0823 0.7070 32 1 2.2651 -3.8359 -0.3240 33 1 3.9330 -1.9930 -1.3462 34 1 4.1216 -0.4409 -0.4447 35 1 2.4352 1.0280 2.3423 36 1 3.8617 0.3878 1.4917 37 1 3.9360 -1.5312 3.0603 38 1 2.5095 -0.8910 3.9110 39 1 5.9316 0.2445 6.9298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238213587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = -21.275345 kcal Electronic energy + Delta-G solvation = -16198.370054 eV Core-core repulsion = 13911.760242 eV Total energy + Delta-G solvation = -2286.609812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76801 -34.17532 -33.07242 -31.73505 -28.99614 -28.19597 -26.58994 -25.57346 -23.38673 -21.04305 -19.99172 -18.95944 -17.58623 -16.58112 -15.72652 -15.44113 -14.44872 -14.18252 -13.48162 -13.01081 -12.85910 -12.62951 -12.22254 -12.08996 -11.89293 -11.52885 -11.22373 -11.14771 -11.05099 -10.95417 -10.63524 -10.53139 -10.28403 -10.22364 -9.96914 -9.82807 -9.65211 -9.29739 -9.19259 -8.95268 -8.47284 -5.98706 -3.95380 3.34087 3.41239 3.45742 4.50328 4.66482 4.71900 4.76366 5.24133 5.29600 5.35892 5.40873 5.50827 5.58899 5.61959 5.71938 5.78030 5.87040 5.94585 6.01892 6.07280 6.09878 6.14030 6.20773 6.25604 6.30492 6.35866 6.40085 6.53856 6.59557 6.65548 6.73972 6.81061 6.94201 7.13547 7.44368 7.57333 7.88252 8.61878 9.07493 9.64966 11.15111 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.036890 B = 0.007895 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.829217 B = 3545.757149 C = 3857.655489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.095 4.095 5 H 0.089 0.911 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.097 4.097 9 H 0.100 0.900 10 C -0.122 4.122 11 C -0.080 4.080 12 H 0.065 0.935 13 C -0.095 4.095 14 C -0.014 4.014 15 C -0.516 4.516 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.265 1.265 22 H -0.289 1.289 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.007 0.993 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 -4.482 -14.750 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.113 4.113 5 H 0.107 0.893 6 C -0.164 4.164 7 C -0.159 4.159 8 C -0.115 4.115 9 H 0.118 0.882 10 C -0.160 4.160 11 C -0.098 4.098 12 H 0.083 0.917 13 C -0.133 4.133 14 C -0.051 4.051 15 C -0.554 4.554 16 H 0.088 0.912 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.190 1.190 22 H -0.215 1.215 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.897 -4.478 -14.579 17.656 hybrid contribution -0.161 -0.884 0.532 1.044 sum -9.058 -5.362 -14.047 17.553 Atomic orbital electron populations 1.21966 0.95338 1.01417 1.00976 1.21618 0.94439 0.95151 0.94987 1.21918 1.01440 0.95249 1.00961 1.23569 0.95492 0.95399 0.96862 0.89266 1.22763 1.00031 0.95992 0.97631 1.22613 0.98432 0.97826 0.97044 1.23620 0.96416 0.95423 0.96068 0.88232 1.23536 0.96209 0.99674 0.96538 1.22438 0.97619 0.95103 0.94645 0.91677 1.21588 0.97630 0.97708 0.96345 1.19612 0.95878 0.96320 0.93339 1.21214 1.28382 1.01787 1.04048 0.91204 1.25042 0.94766 0.97234 0.96586 1.69921 1.34028 1.36714 1.13982 0.86789 0.77936 0.85630 0.79000 1.20439 1.18964 1.21531 0.92890 0.93296 0.92312 0.92076 0.93915 0.92117 0.91189 0.92771 0.92156 0.92574 0.92100 0.90944 0.92717 0.92672 0.96683 0.97507 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.52 37.16 0.28 -1.42 16 2 C -0.06 -0.84 0.70 -152.12 -0.11 -0.95 16 3 C -0.14 -1.92 7.39 37.16 0.27 -1.64 16 4 C -0.10 -1.18 4.32 -85.35 -0.37 -1.55 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 6 C -0.13 -1.47 5.86 -24.33 -0.14 -1.62 16 7 C -0.12 -1.58 6.21 -24.34 -0.15 -1.73 16 8 C -0.10 -1.49 4.39 -85.34 -0.37 -1.86 16 9 H 0.10 1.69 6.90 -51.93 -0.36 1.33 16 10 C -0.12 -1.68 6.23 -22.48 -0.14 -1.82 16 11 C -0.08 -1.30 1.94 -88.20 -0.17 -1.47 16 12 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 13 C -0.10 -1.90 3.44 -26.73 -0.09 -1.99 16 14 C -0.01 -0.34 3.92 -27.88 -0.11 -0.45 16 15 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 19 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.69 6.09 -51.93 -0.32 0.37 16 26 H 0.06 0.89 5.99 -51.93 -0.31 0.58 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.89 6.69 -51.93 -0.35 0.54 16 29 H 0.07 0.77 5.39 -51.93 -0.28 0.49 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.07 6.29 -51.93 -0.33 0.74 16 35 H 0.05 1.11 6.51 -51.93 -0.34 0.77 16 36 H 0.05 1.11 6.09 -51.93 -0.32 0.79 16 37 H 0.01 0.36 5.87 -51.93 -0.30 0.06 16 38 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -30.16 281.18 -7.82 -37.98 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.63 Total: -2.00 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -1.53 Total: -30.03 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.16 -7.82 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238213587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.703 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds