Wall clock time and date at job start Mon Mar 30 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46389 * 2 1 4 4 N 1.46848 * 109.46672 * 240.02880 * 2 1 3 5 5 C 1.46848 * 111.19598 * 301.72880 * 4 2 1 6 6 H 1.09002 * 109.46505 * 58.27071 * 5 4 2 7 7 C 1.47201 * 109.45450 * 178.24524 * 5 4 2 8 8 N 4.78303 * 100.04916 * 227.05037 * 2 1 3 9 9 C 1.53036 * 109.52376 * 298.25362 * 5 4 2 10 10 C 1.53123 * 109.27643 * 59.18201 * 9 5 4 11 11 H 1.08993 * 109.52376 * 62.25085 * 10 9 5 12 12 C 1.50704 * 109.52335 * 182.44036 * 10 9 5 13 13 H 1.08001 * 119.99859 * 119.99655 * 12 10 9 14 14 C 1.37870 * 119.99904 * 300.00474 * 12 10 9 15 15 N 1.31515 * 120.00452 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99956 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46979 * 89.99746 * 16 14 12 18 18 H 1.48502 * 109.46977 * 209.99425 * 16 14 12 19 19 H 1.48501 * 109.47192 * 329.99745 * 16 14 12 20 20 C 1.53035 * 109.46133 * 119.97420 * 2 1 3 21 21 C 1.53001 * 109.50731 * 300.89642 * 20 2 1 22 22 C 1.53007 * 109.50540 * 180.77749 * 20 2 1 23 23 H 1.09005 * 109.47690 * 300.02464 * 1 2 3 24 24 H 1.09004 * 109.47351 * 60.02547 * 1 2 3 25 25 H 1.09006 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.00900 * 110.99780 * 177.63009 * 4 2 1 27 27 H 1.08998 * 109.50475 * 179.12424 * 9 5 4 28 28 H 1.09002 * 109.50406 * 299.24425 * 9 5 4 29 29 H 0.96995 * 120.00702 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.47411 * 179.79821 * 21 20 2 31 31 H 1.08992 * 109.47193 * 299.80578 * 21 20 2 32 32 H 1.09003 * 109.46563 * 59.80322 * 21 20 2 33 33 H 1.08998 * 109.46817 * 300.20120 * 22 20 2 34 34 H 1.08998 * 109.46455 * 60.20095 * 22 20 2 35 35 H 1.09003 * 109.47269 * 180.19503 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0193 -0.6917 -1.1994 5 6 1.5174 -2.0704 -1.2592 6 1 0.4274 -2.0607 -1.2533 7 6 1.9955 -2.7131 -2.4941 8 7 2.3645 -3.2089 -3.4472 9 6 2.0269 -2.8532 -0.0468 10 6 1.5442 -2.1696 1.2355 11 1 0.4548 -2.1822 1.2671 12 6 2.0925 -2.9015 2.4334 13 1 2.7267 -2.3845 3.1383 14 6 1.7846 -4.2310 2.6293 15 7 1.0120 -4.8605 1.7711 16 14 2.4649 -5.1383 4.1137 17 1 1.5178 -5.0082 5.2502 18 1 2.6410 -6.5742 3.7782 19 1 3.7763 -4.5540 4.4929 20 6 2.0398 -0.7209 1.2499 21 6 1.5118 -0.0128 2.4992 22 6 3.5697 -0.7045 1.2608 23 1 -0.3635 0.5142 0.8898 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3634 -1.0277 0.0005 26 1 3.0272 -0.6715 -1.2424 27 1 1.6415 -3.8721 -0.0834 28 1 3.1166 -2.8750 -0.0595 29 1 0.7951 -5.7958 1.9091 30 1 1.8723 -0.5288 3.3891 31 1 1.8648 1.0183 2.5090 32 1 0.4219 -0.0236 2.4895 33 1 3.9447 -1.2077 0.3695 34 1 3.9219 0.3269 1.2711 35 1 3.9324 -1.2212 2.1495 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238396937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:52 Heat of formation + Delta-G solvation = 16.033477 kcal Electronic energy + Delta-G solvation = -16211.252811 eV Core-core repulsion = 13822.720487 eV Total energy + Delta-G solvation = -2388.532324 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75555 -36.02136 -33.65049 -32.88653 -30.74719 -28.62436 -26.71296 -25.90199 -24.18643 -21.44840 -21.33698 -17.79256 -17.60724 -16.06432 -14.86595 -14.63869 -14.44800 -13.96982 -13.47835 -13.25189 -12.97616 -12.38585 -12.24561 -11.88221 -11.78623 -11.59115 -11.47290 -11.19465 -11.09059 -11.02283 -10.69318 -10.61629 -10.46993 -10.20329 -9.93626 -9.44059 -9.32726 -8.89961 -8.40647 -7.76219 -6.06585 -4.12135 3.17945 3.24625 3.31187 3.33657 3.35342 4.37101 4.40284 4.96622 5.24162 5.38083 5.55889 5.70823 5.84506 5.90198 6.00364 6.07318 6.13127 6.33099 6.35642 6.50258 6.53123 6.62594 6.66955 6.76526 6.96806 7.01586 7.09229 7.17529 7.33602 7.61229 7.71659 7.83779 7.97280 8.07965 8.34860 8.89756 9.52926 10.98507 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.011963 C = 0.009316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.769068 B = 2339.944634 C = 3004.727860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 H 0.074 0.926 4 N -0.676 5.676 5 C 0.168 3.832 6 H 0.116 0.884 7 C 0.233 3.767 8 N -0.460 5.460 9 C -0.136 4.136 10 C 0.067 3.933 11 H 0.036 0.964 12 C -0.505 4.505 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.092 4.092 21 C -0.127 4.127 22 C -0.133 4.133 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.340 0.660 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 8.396 -0.282 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 H 0.092 0.908 4 N -0.307 5.307 5 C 0.056 3.944 6 H 0.134 0.866 7 C -0.085 4.085 8 N -0.137 5.137 9 C -0.176 4.176 10 C 0.048 3.952 11 H 0.054 0.946 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.093 4.093 21 C -0.184 4.184 22 C -0.190 4.190 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.159 0.841 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.056 7.730 -2.177 8.030 hybrid contribution 0.808 -0.941 1.855 2.232 sum 0.752 6.788 -0.321 6.837 Atomic orbital electron populations 1.21989 0.94943 1.02799 1.01085 1.21573 0.95468 0.96553 0.87630 0.90792 1.60805 1.15448 1.13826 1.40600 1.19451 1.00963 0.87893 0.86117 0.86617 1.29436 0.92505 0.92722 0.93801 1.81069 1.09857 1.10394 1.12425 1.22436 0.99833 1.02960 0.92420 1.18686 0.96524 0.87673 0.92266 0.94650 1.21151 1.30372 0.95046 1.07757 0.92183 1.24955 0.95053 0.97742 0.96176 1.69826 1.36602 1.10856 1.35601 0.86680 0.79410 0.79130 0.83296 1.20767 1.21387 1.20021 1.21281 0.95132 0.98756 0.94177 1.21740 1.00428 0.97714 0.98560 1.21829 0.95766 0.99019 1.02364 0.92090 0.92963 0.91504 0.84134 0.87983 0.93368 0.92938 0.91969 0.94896 0.93101 0.93630 0.94906 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.21 37.15 0.31 -1.85 16 2 C 0.10 1.46 2.73 -67.73 -0.18 1.27 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 N -0.68 -10.46 6.21 -102.73 -0.64 -11.10 16 5 C 0.17 2.91 2.57 -70.51 -0.18 2.73 16 6 H 0.12 1.96 6.19 -51.93 -0.32 1.64 16 7 C 0.23 4.34 14.92 -20.76 -0.31 4.03 16 8 N -0.46 -9.24 18.54 42.15 0.78 -8.46 16 9 C -0.14 -2.79 3.98 -26.65 -0.11 -2.90 16 10 C 0.07 1.40 1.15 -91.64 -0.11 1.29 16 11 H 0.04 0.81 6.56 -51.93 -0.34 0.47 16 12 C -0.51 -12.15 7.12 -34.44 -0.25 -12.39 16 13 H 0.06 1.44 5.70 -52.49 -0.30 1.14 16 14 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 15 N -0.89 -23.54 11.35 55.43 0.63 -22.91 16 16 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 C -0.09 -1.57 0.30 -154.42 -0.05 -1.61 16 21 C -0.13 -2.07 7.89 37.16 0.29 -1.77 16 22 C -0.13 -2.21 7.58 37.16 0.28 -1.92 16 23 H 0.06 0.81 6.41 -51.93 -0.33 0.48 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.06 4.80 -51.93 -0.25 0.81 16 26 H 0.34 5.15 7.06 -39.29 -0.28 4.87 16 27 H 0.10 2.44 6.15 -51.93 -0.32 2.12 16 28 H 0.05 1.01 6.58 -51.93 -0.34 0.67 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.06 1.11 6.78 -51.93 -0.35 0.76 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 33 H 0.04 0.75 5.12 -51.93 -0.27 0.49 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.22 6.49 -51.93 -0.34 0.89 16 LS Contribution 263.84 15.07 3.98 3.98 Total: -1.00 -25.65 263.84 -5.26 -30.91 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.59 Total: 4.07 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.39 Total: -11.65 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.77 Total: -42.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.65 -5.26 -30.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238396937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.943 kcal (2) G-P(sol) polarization free energy of solvation -25.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds