Wall clock time and date at job start Mon Mar 30 2020 02:52:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.45451 * 2 1
4 4 N 1.46848 * 109.45980 * 240.02318 * 2 1 3
5 5 C 1.46846 * 111.20163 * 301.72878 * 4 2 1
6 6 H 1.08997 * 109.46193 * 178.25487 * 5 4 2
7 7 C 1.47199 * 109.46316 * 58.27408 * 5 4 2
8 8 N 3.55081 * 42.43784 * 211.30348 * 2 1 3
9 9 C 1.53040 * 109.52213 * 298.25622 * 5 4 2
10 10 C 1.53209 * 109.29743 * 59.17788 * 9 5 4
11 11 H 1.09002 * 109.50893 * 62.24220 * 10 9 5
12 12 C 1.50693 * 109.57282 * 182.45874 * 10 9 5
13 13 H 1.08004 * 120.00137 * 119.66586 * 12 10 9
14 14 C 1.37871 * 120.00298 * 299.66188 * 12 10 9
15 15 N 1.31520 * 120.00455 * 180.02562 * 14 12 10
16 16 Si 1.86800 * 120.00093 * 0.02562 * 14 12 10
17 17 H 1.48508 * 109.46867 * 89.99757 * 16 14 12
18 18 H 1.48497 * 109.47506 * 209.99923 * 16 14 12
19 19 H 1.48500 * 109.47131 * 330.00213 * 16 14 12
20 20 C 1.53036 * 109.46151 * 119.97465 * 2 1 3
21 21 C 1.53006 * 109.50137 * 180.77760 * 20 2 1
22 22 C 1.53000 * 109.50430 * 300.85157 * 20 2 1
23 23 H 1.08998 * 109.47184 * 321.24981 * 1 2 3
24 24 H 1.08998 * 109.47232 * 81.25033 * 1 2 3
25 25 H 1.09005 * 109.47162 * 201.24899 * 1 2 3
26 26 H 1.00901 * 110.99724 * 177.62622 * 4 2 1
27 27 H 1.08998 * 109.50498 * 179.12163 * 9 5 4
28 28 H 1.09000 * 109.50403 * 299.20331 * 9 5 4
29 29 H 0.96994 * 120.00611 * 180.02562 * 15 14 12
30 30 H 1.08996 * 109.46867 * 180.02562 * 21 20 2
31 31 H 1.08994 * 109.47261 * 60.07725 * 21 20 2
32 32 H 1.09000 * 109.47017 * 300.07891 * 21 20 2
33 33 H 1.08996 * 109.47269 * 299.93019 * 22 20 2
34 34 H 1.09001 * 109.46745 * 59.92484 * 22 20 2
35 35 H 1.08997 * 109.47639 * 179.97438 * 22 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 7 2.0192 -0.6918 -1.1994
5 6 1.5173 -2.0705 -1.2591
6 1 1.8713 -2.5466 -2.1734
7 6 0.0454 -2.0574 -1.2511
8 7 -1.0905 -2.0472 -1.2449
9 6 2.0268 -2.8532 -0.0467
10 6 1.5442 -2.1696 1.2366
11 1 0.4548 -2.1821 1.2682
12 6 2.0926 -2.9005 2.4349
13 1 2.7310 -2.3844 3.1367
14 6 1.7793 -4.2281 2.6354
15 7 2.2574 -4.8660 3.6815
16 14 0.6756 -5.1210 1.4213
17 1 1.5075 -5.7353 0.3554
18 1 -0.0835 -6.1824 2.1302
19 1 -0.2743 -4.1553 0.8130
20 6 2.0399 -0.7209 1.2499
21 6 3.5698 -0.7045 1.2607
22 6 1.5127 -0.0121 2.4992
23 1 -0.3633 0.8014 0.6432
24 1 -0.3633 0.1563 -1.0157
25 1 -0.3634 -0.9578 0.3725
26 1 3.0271 -0.6717 -1.2426
27 1 1.6414 -3.8721 -0.0831
28 1 3.1165 -2.8757 -0.0598
29 1 2.0374 -5.8000 3.8224
30 1 3.9324 -1.2185 2.1508
31 1 3.9221 0.3269 1.2688
32 1 3.9448 -1.2095 0.3705
33 1 1.8646 1.0194 2.5074
34 1 0.4228 -0.0241 2.4910
35 1 1.8758 -0.5262 3.3891
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238398144.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:54
Heat of formation + Delta-G solvation = 45.982761 kcal
Electronic energy + Delta-G solvation = -16634.133486 eV
Core-core repulsion = 14246.899860 eV
Total energy + Delta-G solvation = -2387.233625 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.37008 -36.01713 -33.69536 -33.09483 -31.30481 -28.88698 -26.88206 -26.00307
-23.91038 -22.11208 -21.50996 -18.35571 -17.12865 -16.27110 -15.72931 -15.03531
-14.33659 -14.11349 -13.71363 -13.39131 -13.04531 -12.81614 -12.47353 -12.14481
-11.96102 -11.65697 -11.52156 -11.42036 -11.28687 -11.11925 -10.71080 -10.37717
-10.25711 -10.09642 -9.91500 -9.62191 -9.56477 -8.94707 -8.59795 -7.95294
-6.13425 -4.11922 3.10905 3.18713 3.22974 3.34332 3.37147 4.31990
4.34747 4.60053 5.12637 5.25643 5.37782 5.47755 5.52696 5.69526
5.79792 5.91350 5.94215 6.15869 6.20635 6.26922 6.39677 6.43580
6.46854 6.54531 6.61886 6.83059 6.89916 6.99933 7.09374 7.19971
7.41313 7.51848 7.70244 8.01042 8.45870 8.91014 9.49327 10.99083
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.026039 B = 0.015447 C = 0.011941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.059543 B = 1812.169267 C = 2344.279271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.087 3.913
3 H 0.079 0.921
4 N -0.670 5.670
5 C 0.170 3.830
6 H 0.114 0.886
7 C 0.243 3.757
8 N -0.452 5.452
9 C -0.153 4.153
10 C 0.024 3.976
11 H 0.031 0.969
12 C -0.504 4.504
13 H 0.081 0.919
14 C 0.072 3.928
15 N -0.898 5.898
16 Si 0.873 3.127
17 H -0.277 1.277
18 H -0.297 1.297
19 H -0.265 1.265
20 C -0.078 4.078
21 C -0.133 4.133
22 C -0.127 4.127
23 H 0.054 0.946
24 H 0.057 0.943
25 H 0.074 0.926
26 H 0.354 0.646
27 H 0.057 0.943
28 H 0.086 0.914
29 H 0.263 0.737
30 H 0.073 0.927
31 H 0.036 0.964
32 H 0.046 0.954
33 H 0.035 0.965
34 H 0.046 0.954
35 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.233 7.466 -8.006 11.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.022 4.022
3 H 0.097 0.903
4 N -0.302 5.302
5 C 0.057 3.943
6 H 0.131 0.869
7 C -0.075 4.075
8 N -0.130 5.130
9 C -0.193 4.193
10 C 0.005 3.995
11 H 0.048 0.952
12 C -0.542 4.542
13 H 0.099 0.901
14 C -0.129 4.129
15 N -0.537 5.537
16 Si 0.703 3.297
17 H -0.204 1.204
18 H -0.224 1.224
19 H -0.190 1.190
20 C -0.080 4.080
21 C -0.190 4.190
22 C -0.185 4.185
23 H 0.073 0.927
24 H 0.076 0.924
25 H 0.093 0.907
26 H 0.175 0.825
27 H 0.076 0.924
28 H 0.104 0.896
29 H 0.073 0.927
30 H 0.092 0.908
31 H 0.055 0.945
32 H 0.065 0.935
33 H 0.055 0.945
34 H 0.065 0.935
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 0.048 7.569 -8.331 11.255
hybrid contribution 0.378 -1.183 0.131 1.249
sum 0.426 6.385 -8.200 10.401
Atomic orbital electron populations
1.22588 0.95344 1.03154 1.01471 1.21706 0.95152 0.97214 0.88151
0.90264 1.60860 1.15879 1.12985 1.40476 1.19232 0.82292 0.91593
1.01178 0.86879 1.28590 0.94985 0.92051 0.91856 1.81135 1.13086
1.08982 1.09768 1.22875 1.02245 0.99173 0.95028 1.19276 0.96349
0.90940 0.92926 0.95155 1.20993 1.30766 0.95204 1.07236 0.90089
1.24988 0.95313 0.97605 0.95033 1.69875 1.44965 1.10790 1.28027
0.87058 0.81548 0.79821 0.81234 1.20445 1.22401 1.18981 1.21043
0.95599 0.96932 0.94392 1.21841 0.94950 0.99452 1.02770 1.21717
1.00292 0.97942 0.98573 0.92662 0.92417 0.90733 0.82534 0.92434
0.89587 0.92662 0.90843 0.94530 0.93517 0.94550 0.93487 0.91329
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.83 6.29 37.16 0.23 -2.60 16
2 C 0.09 1.34 2.73 -67.72 -0.18 1.15 16
3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
4 N -0.67 -9.34 6.47 -102.73 -0.66 -10.01 16
5 C 0.17 2.65 3.55 -70.51 -0.25 2.40 16
6 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16
7 C 0.24 4.47 9.83 -20.76 -0.20 4.27 16
8 N -0.45 -9.14 16.70 42.15 0.70 -8.44 16
9 C -0.15 -2.87 3.97 -26.60 -0.11 -2.97 16
10 C 0.02 0.50 0.66 -91.61 -0.06 0.44 16
11 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16
12 C -0.50 -12.82 7.70 -34.45 -0.27 -13.08 16
13 H 0.08 2.21 5.94 -52.48 -0.31 1.90 16
14 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16
15 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16
16 Si 0.87 21.40 24.37 -169.99 -4.14 17.26 16
17 H -0.28 -6.49 6.89 56.52 0.39 -6.10 16
18 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16
19 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16
20 C -0.08 -1.36 0.30 -154.43 -0.05 -1.40 16
21 C -0.13 -2.12 7.58 37.16 0.28 -1.84 16
22 C -0.13 -2.23 7.96 37.16 0.30 -1.94 16
23 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16
24 H 0.06 0.98 6.83 -51.93 -0.35 0.63 16
25 H 0.07 1.46 3.38 -51.93 -0.18 1.29 16
26 H 0.35 4.19 7.15 -39.29 -0.28 3.91 16
27 H 0.06 1.19 3.39 -51.93 -0.18 1.02 16
28 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16
29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
30 H 0.07 1.36 6.49 -51.93 -0.34 1.02 16
31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.05 0.67 5.12 -51.93 -0.27 0.41 16
33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.05 0.83 6.93 -51.93 -0.36 0.47 16
35 H 0.07 1.34 6.79 -51.93 -0.35 0.99 16
LS Contribution 249.93 15.07 3.77 3.77
Total: -1.00 -29.01 249.93 -4.44 -33.45
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -4.47 Total: 3.28 kcal
Atomic # 6 Polarization: -13.28 SS G_CDS: -0.40 Total: -13.68 kcal
Atomic # 7 Polarization: -44.89 SS G_CDS: 0.81 Total: -44.07 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal
Total LS contribution 3.77 Total: 3.77 kcal
Total: -29.01 -4.44 -33.45 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238398144.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.430 kcal
(2) G-P(sol) polarization free energy of solvation -29.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds