Wall clock time and date at job start Mon Mar 30 2020 02:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45451 * 2 1 4 4 N 1.46848 * 109.45980 * 240.02318 * 2 1 3 5 5 C 1.46846 * 111.20163 * 301.72878 * 4 2 1 6 6 H 1.08997 * 109.46193 * 178.25487 * 5 4 2 7 7 C 1.47199 * 109.46316 * 58.27408 * 5 4 2 8 8 N 3.55081 * 42.43784 * 211.30348 * 2 1 3 9 9 C 1.53040 * 109.52213 * 298.25622 * 5 4 2 10 10 C 1.53209 * 109.29743 * 59.17788 * 9 5 4 11 11 H 1.09002 * 109.50893 * 62.24220 * 10 9 5 12 12 C 1.50693 * 109.57282 * 182.45874 * 10 9 5 13 13 H 1.08004 * 120.00137 * 119.66586 * 12 10 9 14 14 C 1.37871 * 120.00298 * 299.66188 * 12 10 9 15 15 N 1.31520 * 120.00455 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00093 * 0.02562 * 14 12 10 17 17 H 1.48508 * 109.46867 * 89.99757 * 16 14 12 18 18 H 1.48497 * 109.47506 * 209.99923 * 16 14 12 19 19 H 1.48500 * 109.47131 * 330.00213 * 16 14 12 20 20 C 1.53036 * 109.46151 * 119.97465 * 2 1 3 21 21 C 1.53006 * 109.50137 * 180.77760 * 20 2 1 22 22 C 1.53000 * 109.50430 * 300.85157 * 20 2 1 23 23 H 1.08998 * 109.47184 * 321.24981 * 1 2 3 24 24 H 1.08998 * 109.47232 * 81.25033 * 1 2 3 25 25 H 1.09005 * 109.47162 * 201.24899 * 1 2 3 26 26 H 1.00901 * 110.99724 * 177.62622 * 4 2 1 27 27 H 1.08998 * 109.50498 * 179.12163 * 9 5 4 28 28 H 1.09000 * 109.50403 * 299.20331 * 9 5 4 29 29 H 0.96994 * 120.00611 * 180.02562 * 15 14 12 30 30 H 1.08996 * 109.46867 * 180.02562 * 21 20 2 31 31 H 1.08994 * 109.47261 * 60.07725 * 21 20 2 32 32 H 1.09000 * 109.47017 * 300.07891 * 21 20 2 33 33 H 1.08996 * 109.47269 * 299.93019 * 22 20 2 34 34 H 1.09001 * 109.46745 * 59.92484 * 22 20 2 35 35 H 1.08997 * 109.47639 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6918 -1.1994 5 6 1.5173 -2.0705 -1.2591 6 1 1.8713 -2.5466 -2.1734 7 6 0.0454 -2.0574 -1.2511 8 7 -1.0905 -2.0472 -1.2449 9 6 2.0268 -2.8532 -0.0467 10 6 1.5442 -2.1696 1.2366 11 1 0.4548 -2.1821 1.2682 12 6 2.0926 -2.9005 2.4349 13 1 2.7310 -2.3844 3.1367 14 6 1.7793 -4.2281 2.6354 15 7 2.2574 -4.8660 3.6815 16 14 0.6756 -5.1210 1.4213 17 1 1.5075 -5.7353 0.3554 18 1 -0.0835 -6.1824 2.1302 19 1 -0.2743 -4.1553 0.8130 20 6 2.0399 -0.7209 1.2499 21 6 3.5698 -0.7045 1.2607 22 6 1.5127 -0.0121 2.4992 23 1 -0.3633 0.8014 0.6432 24 1 -0.3633 0.1563 -1.0157 25 1 -0.3634 -0.9578 0.3725 26 1 3.0271 -0.6717 -1.2426 27 1 1.6414 -3.8721 -0.0831 28 1 3.1165 -2.8757 -0.0598 29 1 2.0374 -5.8000 3.8224 30 1 3.9324 -1.2185 2.1508 31 1 3.9221 0.3269 1.2688 32 1 3.9448 -1.2095 0.3705 33 1 1.8646 1.0194 2.5074 34 1 0.4228 -0.0241 2.4910 35 1 1.8758 -0.5262 3.3891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238398144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:54 Heat of formation + Delta-G solvation = 45.982761 kcal Electronic energy + Delta-G solvation = -16634.133486 eV Core-core repulsion = 14246.899860 eV Total energy + Delta-G solvation = -2387.233625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37008 -36.01713 -33.69536 -33.09483 -31.30481 -28.88698 -26.88206 -26.00307 -23.91038 -22.11208 -21.50996 -18.35571 -17.12865 -16.27110 -15.72931 -15.03531 -14.33659 -14.11349 -13.71363 -13.39131 -13.04531 -12.81614 -12.47353 -12.14481 -11.96102 -11.65697 -11.52156 -11.42036 -11.28687 -11.11925 -10.71080 -10.37717 -10.25711 -10.09642 -9.91500 -9.62191 -9.56477 -8.94707 -8.59795 -7.95294 -6.13425 -4.11922 3.10905 3.18713 3.22974 3.34332 3.37147 4.31990 4.34747 4.60053 5.12637 5.25643 5.37782 5.47755 5.52696 5.69526 5.79792 5.91350 5.94215 6.15869 6.20635 6.26922 6.39677 6.43580 6.46854 6.54531 6.61886 6.83059 6.89916 6.99933 7.09374 7.19971 7.41313 7.51848 7.70244 8.01042 8.45870 8.91014 9.49327 10.99083 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.015447 C = 0.011941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.059543 B = 1812.169267 C = 2344.279271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 H 0.079 0.921 4 N -0.670 5.670 5 C 0.170 3.830 6 H 0.114 0.886 7 C 0.243 3.757 8 N -0.452 5.452 9 C -0.153 4.153 10 C 0.024 3.976 11 H 0.031 0.969 12 C -0.504 4.504 13 H 0.081 0.919 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.078 4.078 21 C -0.133 4.133 22 C -0.127 4.127 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.354 0.646 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 7.466 -8.006 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 H 0.097 0.903 4 N -0.302 5.302 5 C 0.057 3.943 6 H 0.131 0.869 7 C -0.075 4.075 8 N -0.130 5.130 9 C -0.193 4.193 10 C 0.005 3.995 11 H 0.048 0.952 12 C -0.542 4.542 13 H 0.099 0.901 14 C -0.129 4.129 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.224 1.224 19 H -0.190 1.190 20 C -0.080 4.080 21 C -0.190 4.190 22 C -0.185 4.185 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.175 0.825 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.048 7.569 -8.331 11.255 hybrid contribution 0.378 -1.183 0.131 1.249 sum 0.426 6.385 -8.200 10.401 Atomic orbital electron populations 1.22588 0.95344 1.03154 1.01471 1.21706 0.95152 0.97214 0.88151 0.90264 1.60860 1.15879 1.12985 1.40476 1.19232 0.82292 0.91593 1.01178 0.86879 1.28590 0.94985 0.92051 0.91856 1.81135 1.13086 1.08982 1.09768 1.22875 1.02245 0.99173 0.95028 1.19276 0.96349 0.90940 0.92926 0.95155 1.20993 1.30766 0.95204 1.07236 0.90089 1.24988 0.95313 0.97605 0.95033 1.69875 1.44965 1.10790 1.28027 0.87058 0.81548 0.79821 0.81234 1.20445 1.22401 1.18981 1.21043 0.95599 0.96932 0.94392 1.21841 0.94950 0.99452 1.02770 1.21717 1.00292 0.97942 0.98573 0.92662 0.92417 0.90733 0.82534 0.92434 0.89587 0.92662 0.90843 0.94530 0.93517 0.94550 0.93487 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 6.29 37.16 0.23 -2.60 16 2 C 0.09 1.34 2.73 -67.72 -0.18 1.15 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 N -0.67 -9.34 6.47 -102.73 -0.66 -10.01 16 5 C 0.17 2.65 3.55 -70.51 -0.25 2.40 16 6 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.24 4.47 9.83 -20.76 -0.20 4.27 16 8 N -0.45 -9.14 16.70 42.15 0.70 -8.44 16 9 C -0.15 -2.87 3.97 -26.60 -0.11 -2.97 16 10 C 0.02 0.50 0.66 -91.61 -0.06 0.44 16 11 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16 12 C -0.50 -12.82 7.70 -34.45 -0.27 -13.08 16 13 H 0.08 2.21 5.94 -52.48 -0.31 1.90 16 14 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 15 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16 16 Si 0.87 21.40 24.37 -169.99 -4.14 17.26 16 17 H -0.28 -6.49 6.89 56.52 0.39 -6.10 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 19 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 20 C -0.08 -1.36 0.30 -154.43 -0.05 -1.40 16 21 C -0.13 -2.12 7.58 37.16 0.28 -1.84 16 22 C -0.13 -2.23 7.96 37.16 0.30 -1.94 16 23 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 24 H 0.06 0.98 6.83 -51.93 -0.35 0.63 16 25 H 0.07 1.46 3.38 -51.93 -0.18 1.29 16 26 H 0.35 4.19 7.15 -39.29 -0.28 3.91 16 27 H 0.06 1.19 3.39 -51.93 -0.18 1.02 16 28 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.07 1.36 6.49 -51.93 -0.34 1.02 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.67 5.12 -51.93 -0.27 0.41 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.83 6.93 -51.93 -0.36 0.47 16 35 H 0.07 1.34 6.79 -51.93 -0.35 0.99 16 LS Contribution 249.93 15.07 3.77 3.77 Total: -1.00 -29.01 249.93 -4.44 -33.45 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.47 Total: 3.28 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.40 Total: -13.68 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.81 Total: -44.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.01 -4.44 -33.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238398144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.430 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds