Wall clock time and date at job start Mon Mar 30 2020 02:52:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.45451 * 2 1
4 4 N 1.46848 * 109.45980 * 240.02318 * 2 1 3
5 5 C 1.46846 * 111.20163 * 301.72878 * 4 2 1
6 6 H 1.08997 * 109.46193 * 178.25487 * 5 4 2
7 7 C 1.47199 * 109.46316 * 58.27408 * 5 4 2
8 8 N 3.55081 * 42.43784 * 211.30348 * 2 1 3
9 9 C 1.53040 * 109.52213 * 298.25622 * 5 4 2
10 10 C 1.53209 * 109.29743 * 59.17788 * 9 5 4
11 11 H 1.09002 * 109.50893 * 62.24220 * 10 9 5
12 12 C 1.50693 * 109.57282 * 182.45874 * 10 9 5
13 13 H 1.08004 * 120.00137 * 119.66586 * 12 10 9
14 14 C 1.37871 * 120.00298 * 299.66188 * 12 10 9
15 15 N 1.31520 * 120.00455 * 180.02562 * 14 12 10
16 16 Si 1.86800 * 120.00093 * 0.02562 * 14 12 10
17 17 H 1.48508 * 109.46867 * 89.99757 * 16 14 12
18 18 H 1.48497 * 109.47506 * 209.99923 * 16 14 12
19 19 H 1.48500 * 109.47131 * 330.00213 * 16 14 12
20 20 C 1.53036 * 109.46151 * 119.97465 * 2 1 3
21 21 C 1.53006 * 109.50137 * 180.77760 * 20 2 1
22 22 C 1.53000 * 109.50430 * 300.85157 * 20 2 1
23 23 H 1.08998 * 109.47184 * 321.24981 * 1 2 3
24 24 H 1.08998 * 109.47232 * 81.25033 * 1 2 3
25 25 H 1.09005 * 109.47162 * 201.24899 * 1 2 3
26 26 H 1.00901 * 110.99724 * 177.62622 * 4 2 1
27 27 H 1.08998 * 109.50498 * 179.12163 * 9 5 4
28 28 H 1.09000 * 109.50403 * 299.20331 * 9 5 4
29 29 H 0.96994 * 120.00611 * 180.02562 * 15 14 12
30 30 H 1.08996 * 109.46867 * 180.02562 * 21 20 2
31 31 H 1.08994 * 109.47261 * 60.07725 * 21 20 2
32 32 H 1.09000 * 109.47017 * 300.07891 * 21 20 2
33 33 H 1.08996 * 109.47269 * 299.93019 * 22 20 2
34 34 H 1.09001 * 109.46745 * 59.92484 * 22 20 2
35 35 H 1.08997 * 109.47639 * 179.97438 * 22 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 7 2.0192 -0.6918 -1.1994
5 6 1.5173 -2.0705 -1.2591
6 1 1.8713 -2.5466 -2.1734
7 6 0.0454 -2.0574 -1.2511
8 7 -1.0905 -2.0472 -1.2449
9 6 2.0268 -2.8532 -0.0467
10 6 1.5442 -2.1696 1.2366
11 1 0.4548 -2.1821 1.2682
12 6 2.0926 -2.9005 2.4349
13 1 2.7310 -2.3844 3.1367
14 6 1.7793 -4.2281 2.6354
15 7 2.2574 -4.8660 3.6815
16 14 0.6756 -5.1210 1.4213
17 1 1.5075 -5.7353 0.3554
18 1 -0.0835 -6.1824 2.1302
19 1 -0.2743 -4.1553 0.8130
20 6 2.0399 -0.7209 1.2499
21 6 3.5698 -0.7045 1.2607
22 6 1.5127 -0.0121 2.4992
23 1 -0.3633 0.8014 0.6432
24 1 -0.3633 0.1563 -1.0157
25 1 -0.3634 -0.9578 0.3725
26 1 3.0271 -0.6717 -1.2426
27 1 1.6414 -3.8721 -0.0831
28 1 3.1165 -2.8757 -0.0598
29 1 2.0374 -5.8000 3.8224
30 1 3.9324 -1.2185 2.1508
31 1 3.9221 0.3269 1.2688
32 1 3.9448 -1.2095 0.3705
33 1 1.8646 1.0194 2.5074
34 1 0.4228 -0.0241 2.4910
35 1 1.8758 -0.5262 3.3891
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238398144.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:54
Heat of formation + Delta-G solvation = 24.779986 kcal
Electronic energy + Delta-G solvation = -16635.052907 eV
Core-core repulsion = 14246.899860 eV
Total energy + Delta-G solvation = -2388.153047 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.75327 -37.48493 -35.29355 -34.64107 -33.03140 -30.26162 -28.39202 -27.46937
-25.52087 -23.58045 -22.99597 -19.77324 -19.00742 -17.67478 -17.10735 -16.64676
-15.98862 -15.63245 -15.27341 -14.91760 -14.43466 -14.29298 -14.22087 -13.59515
-13.36195 -13.09117 -13.04156 -12.89253 -12.80892 -12.65451 -12.25522 -12.09369
-11.78507 -11.67287 -11.46882 -11.25383 -11.14441 -10.68983 -10.53564 -9.25659
-8.26324 -6.24757 1.21146 1.33777 1.37848 1.72921 1.82884 2.29908
2.99621 3.11309 3.39182 3.91777 4.03292 4.11462 4.13365 4.43412
4.46985 4.51816 4.57130 4.73958 4.89375 4.95204 5.00270 5.05474
5.13302 5.18248 5.18872 5.37650 5.49181 5.56481 5.60934 5.75579
5.80884 5.98234 6.39547 6.48034 6.66863 6.83683 7.38856 8.89829
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.026039 B = 0.015447 C = 0.011941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.059543 B = 1812.169267 C = 2344.279271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.096 3.904
3 H 0.110 0.890
4 N -0.653 5.653
5 C 0.176 3.824
6 H 0.160 0.840
7 C 0.251 3.749
8 N -0.491 5.491
9 C -0.153 4.153
10 C 0.022 3.978
11 H 0.005 0.995
12 C -0.486 4.486
13 H 0.052 0.948
14 C 0.018 3.982
15 N -0.949 5.949
16 Si 0.927 3.073
17 H -0.254 1.254
18 H -0.312 1.312
19 H -0.269 1.269
20 C -0.078 4.078
21 C -0.128 4.128
22 C -0.126 4.126
23 H 0.064 0.936
24 H 0.056 0.944
25 H 0.043 0.957
26 H 0.373 0.627
27 H 0.038 0.962
28 H 0.103 0.897
29 H 0.261 0.739
30 H 0.038 0.962
31 H 0.067 0.933
32 H 0.065 0.935
33 H 0.068 0.932
34 H 0.036 0.964
35 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.264 9.138 -10.695 14.441
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.014 4.014
3 H 0.128 0.872
4 N -0.288 5.288
5 C 0.063 3.937
6 H 0.177 0.823
7 C -0.066 4.066
8 N -0.170 5.170
9 C -0.193 4.193
10 C 0.003 3.997
11 H 0.023 0.977
12 C -0.524 4.524
13 H 0.070 0.930
14 C -0.179 4.179
15 N -0.590 5.590
16 Si 0.757 3.243
17 H -0.180 1.180
18 H -0.241 1.241
19 H -0.194 1.194
20 C -0.079 4.079
21 C -0.185 4.185
22 C -0.184 4.184
23 H 0.082 0.918
24 H 0.075 0.925
25 H 0.062 0.938
26 H 0.196 0.804
27 H 0.056 0.944
28 H 0.122 0.878
29 H 0.070 0.930
30 H 0.057 0.943
31 H 0.086 0.914
32 H 0.084 0.916
33 H 0.087 0.913
34 H 0.055 0.945
35 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 1.102 9.260 -11.051 14.460
hybrid contribution 0.051 -1.609 1.058 1.926
sum 1.153 7.651 -9.993 12.638
Atomic orbital electron populations
1.22516 0.96648 1.01802 1.01328 1.21649 0.93977 0.98548 0.87178
0.87182 1.60858 1.17267 1.11470 1.39172 1.19426 0.80530 0.92284
1.01423 0.82314 1.29185 0.95673 0.90951 0.90745 1.81141 1.14552
1.10232 1.11036 1.22755 1.03255 0.98166 0.95076 1.19211 0.94629
0.93425 0.92401 0.97732 1.21328 1.28461 0.94699 1.07888 0.92988
1.25644 0.96935 0.98844 0.96459 1.70014 1.47602 1.11053 1.30362
0.86200 0.80028 0.78282 0.79834 1.17973 1.24125 1.19392 1.21054
0.96747 0.94567 0.95567 1.21777 0.93446 1.01282 1.02019 1.21688
0.99641 0.99536 0.97502 0.91757 0.92530 0.93771 0.80365 0.94383
0.87837 0.93019 0.94287 0.91424 0.91589 0.91315 0.94482 0.94570
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.17 6.29 71.98 0.45 -4.72 16
2 C 0.10 2.55 2.73 44.94 0.12 2.67 16
3 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16
4 N -0.65 -14.88 6.47 -478.93 -3.10 -17.98 16
5 C 0.18 4.76 3.55 43.13 0.15 4.91 16
6 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16
7 C 0.25 8.65 9.83 89.44 0.88 9.52 16
8 N -0.49 -19.26 16.70 20.00 0.33 -18.93 16
9 C -0.15 -5.28 3.97 30.68 0.12 -5.16 16
10 C 0.02 0.91 0.66 -11.43 -0.01 0.90 16
11 H 0.00 0.22 4.77 -2.39 -0.01 0.21 16
12 C -0.49 -25.15 7.70 25.60 0.20 -24.95 16
13 H 0.05 2.96 5.94 -2.91 -0.02 2.94 16
14 C 0.02 0.99 5.45 84.65 0.46 1.45 16
15 N -0.95 -57.77 13.96 21.45 0.30 -57.48 16
16 Si 0.93 45.01 24.37 68.60 1.67 46.68 16
17 H -0.25 -11.26 6.89 99.48 0.69 -10.58 16
18 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16
19 H -0.27 -13.06 6.53 99.48 0.65 -12.41 16
20 C -0.08 -2.52 0.30 -52.13 -0.02 -2.53 16
21 C -0.13 -3.67 7.58 71.98 0.55 -3.13 16
22 C -0.13 -4.27 7.96 71.98 0.57 -3.69 16
23 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16
24 H 0.06 1.78 6.83 -2.39 -0.02 1.76 16
25 H 0.04 1.67 3.38 -2.38 -0.01 1.67 16
26 H 0.37 6.47 7.15 -89.69 -0.64 5.83 16
27 H 0.04 1.48 3.39 -2.39 -0.01 1.47 16
28 H 0.10 3.22 6.58 -2.39 -0.02 3.21 16
29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16
30 H 0.04 1.39 6.49 -2.39 -0.02 1.38 16
31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.07 1.61 5.12 -2.39 -0.01 1.60 16
33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
34 H 0.04 1.29 6.93 -2.39 -0.02 1.28 16
35 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16
Total: -1.00 -65.92 249.93 3.09 -62.83
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: 0.40 Total: 9.59 kcal
Atomic # 6 Polarization: -28.20 SS G_CDS: 3.48 Total: -24.72 kcal
Atomic # 7 Polarization: -91.92 SS G_CDS: -2.46 Total: -94.38 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.68 kcal
Total: -65.92 3.09 -62.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238398144.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.609 kcal
(2) G-P(sol) polarization free energy of solvation -65.918 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds