Wall clock time and date at job start Mon Mar 30 2020 02:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45451 * 2 1 4 4 N 1.46848 * 109.45980 * 240.02318 * 2 1 3 5 5 C 1.46846 * 111.20163 * 301.72878 * 4 2 1 6 6 H 1.08997 * 109.46193 * 178.25487 * 5 4 2 7 7 C 1.47199 * 109.46316 * 58.27408 * 5 4 2 8 8 N 3.55081 * 42.43784 * 211.30348 * 2 1 3 9 9 C 1.53040 * 109.52213 * 298.25622 * 5 4 2 10 10 C 1.53209 * 109.29743 * 59.17788 * 9 5 4 11 11 H 1.09002 * 109.50893 * 62.24220 * 10 9 5 12 12 C 1.50693 * 109.57282 * 182.45874 * 10 9 5 13 13 H 1.08004 * 120.00137 * 119.66586 * 12 10 9 14 14 C 1.37871 * 120.00298 * 299.66188 * 12 10 9 15 15 N 1.31520 * 120.00455 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00093 * 0.02562 * 14 12 10 17 17 H 1.48508 * 109.46867 * 89.99757 * 16 14 12 18 18 H 1.48497 * 109.47506 * 209.99923 * 16 14 12 19 19 H 1.48500 * 109.47131 * 330.00213 * 16 14 12 20 20 C 1.53036 * 109.46151 * 119.97465 * 2 1 3 21 21 C 1.53006 * 109.50137 * 180.77760 * 20 2 1 22 22 C 1.53000 * 109.50430 * 300.85157 * 20 2 1 23 23 H 1.08998 * 109.47184 * 321.24981 * 1 2 3 24 24 H 1.08998 * 109.47232 * 81.25033 * 1 2 3 25 25 H 1.09005 * 109.47162 * 201.24899 * 1 2 3 26 26 H 1.00901 * 110.99724 * 177.62622 * 4 2 1 27 27 H 1.08998 * 109.50498 * 179.12163 * 9 5 4 28 28 H 1.09000 * 109.50403 * 299.20331 * 9 5 4 29 29 H 0.96994 * 120.00611 * 180.02562 * 15 14 12 30 30 H 1.08996 * 109.46867 * 180.02562 * 21 20 2 31 31 H 1.08994 * 109.47261 * 60.07725 * 21 20 2 32 32 H 1.09000 * 109.47017 * 300.07891 * 21 20 2 33 33 H 1.08996 * 109.47269 * 299.93019 * 22 20 2 34 34 H 1.09001 * 109.46745 * 59.92484 * 22 20 2 35 35 H 1.08997 * 109.47639 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6918 -1.1994 5 6 1.5173 -2.0705 -1.2591 6 1 1.8713 -2.5466 -2.1734 7 6 0.0454 -2.0574 -1.2511 8 7 -1.0905 -2.0472 -1.2449 9 6 2.0268 -2.8532 -0.0467 10 6 1.5442 -2.1696 1.2366 11 1 0.4548 -2.1821 1.2682 12 6 2.0926 -2.9005 2.4349 13 1 2.7310 -2.3844 3.1367 14 6 1.7793 -4.2281 2.6354 15 7 2.2574 -4.8660 3.6815 16 14 0.6756 -5.1210 1.4213 17 1 1.5075 -5.7353 0.3554 18 1 -0.0835 -6.1824 2.1302 19 1 -0.2743 -4.1553 0.8130 20 6 2.0399 -0.7209 1.2499 21 6 3.5698 -0.7045 1.2607 22 6 1.5127 -0.0121 2.4992 23 1 -0.3633 0.8014 0.6432 24 1 -0.3633 0.1563 -1.0157 25 1 -0.3634 -0.9578 0.3725 26 1 3.0271 -0.6717 -1.2426 27 1 1.6414 -3.8721 -0.0831 28 1 3.1165 -2.8757 -0.0598 29 1 2.0374 -5.8000 3.8224 30 1 3.9324 -1.2185 2.1508 31 1 3.9221 0.3269 1.2688 32 1 3.9448 -1.2095 0.3705 33 1 1.8646 1.0194 2.5074 34 1 0.4228 -0.0241 2.4910 35 1 1.8758 -0.5262 3.3891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238398144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:54 Heat of formation + Delta-G solvation = 24.779986 kcal Electronic energy + Delta-G solvation = -16635.052907 eV Core-core repulsion = 14246.899860 eV Total energy + Delta-G solvation = -2388.153047 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.75327 -37.48493 -35.29355 -34.64107 -33.03140 -30.26162 -28.39202 -27.46937 -25.52087 -23.58045 -22.99597 -19.77324 -19.00742 -17.67478 -17.10735 -16.64676 -15.98862 -15.63245 -15.27341 -14.91760 -14.43466 -14.29298 -14.22087 -13.59515 -13.36195 -13.09117 -13.04156 -12.89253 -12.80892 -12.65451 -12.25522 -12.09369 -11.78507 -11.67287 -11.46882 -11.25383 -11.14441 -10.68983 -10.53564 -9.25659 -8.26324 -6.24757 1.21146 1.33777 1.37848 1.72921 1.82884 2.29908 2.99621 3.11309 3.39182 3.91777 4.03292 4.11462 4.13365 4.43412 4.46985 4.51816 4.57130 4.73958 4.89375 4.95204 5.00270 5.05474 5.13302 5.18248 5.18872 5.37650 5.49181 5.56481 5.60934 5.75579 5.80884 5.98234 6.39547 6.48034 6.66863 6.83683 7.38856 8.89829 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.015447 C = 0.011941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.059543 B = 1812.169267 C = 2344.279271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 H 0.110 0.890 4 N -0.653 5.653 5 C 0.176 3.824 6 H 0.160 0.840 7 C 0.251 3.749 8 N -0.491 5.491 9 C -0.153 4.153 10 C 0.022 3.978 11 H 0.005 0.995 12 C -0.486 4.486 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.949 5.949 16 Si 0.927 3.073 17 H -0.254 1.254 18 H -0.312 1.312 19 H -0.269 1.269 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.126 4.126 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.373 0.627 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.261 0.739 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 9.138 -10.695 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 H 0.128 0.872 4 N -0.288 5.288 5 C 0.063 3.937 6 H 0.177 0.823 7 C -0.066 4.066 8 N -0.170 5.170 9 C -0.193 4.193 10 C 0.003 3.997 11 H 0.023 0.977 12 C -0.524 4.524 13 H 0.070 0.930 14 C -0.179 4.179 15 N -0.590 5.590 16 Si 0.757 3.243 17 H -0.180 1.180 18 H -0.241 1.241 19 H -0.194 1.194 20 C -0.079 4.079 21 C -0.185 4.185 22 C -0.184 4.184 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.196 0.804 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.102 9.260 -11.051 14.460 hybrid contribution 0.051 -1.609 1.058 1.926 sum 1.153 7.651 -9.993 12.638 Atomic orbital electron populations 1.22516 0.96648 1.01802 1.01328 1.21649 0.93977 0.98548 0.87178 0.87182 1.60858 1.17267 1.11470 1.39172 1.19426 0.80530 0.92284 1.01423 0.82314 1.29185 0.95673 0.90951 0.90745 1.81141 1.14552 1.10232 1.11036 1.22755 1.03255 0.98166 0.95076 1.19211 0.94629 0.93425 0.92401 0.97732 1.21328 1.28461 0.94699 1.07888 0.92988 1.25644 0.96935 0.98844 0.96459 1.70014 1.47602 1.11053 1.30362 0.86200 0.80028 0.78282 0.79834 1.17973 1.24125 1.19392 1.21054 0.96747 0.94567 0.95567 1.21777 0.93446 1.01282 1.02019 1.21688 0.99641 0.99536 0.97502 0.91757 0.92530 0.93771 0.80365 0.94383 0.87837 0.93019 0.94287 0.91424 0.91589 0.91315 0.94482 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 6.29 71.98 0.45 -4.72 16 2 C 0.10 2.55 2.73 44.94 0.12 2.67 16 3 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 4 N -0.65 -14.88 6.47 -478.93 -3.10 -17.98 16 5 C 0.18 4.76 3.55 43.13 0.15 4.91 16 6 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 7 C 0.25 8.65 9.83 89.44 0.88 9.52 16 8 N -0.49 -19.26 16.70 20.00 0.33 -18.93 16 9 C -0.15 -5.28 3.97 30.68 0.12 -5.16 16 10 C 0.02 0.91 0.66 -11.43 -0.01 0.90 16 11 H 0.00 0.22 4.77 -2.39 -0.01 0.21 16 12 C -0.49 -25.15 7.70 25.60 0.20 -24.95 16 13 H 0.05 2.96 5.94 -2.91 -0.02 2.94 16 14 C 0.02 0.99 5.45 84.65 0.46 1.45 16 15 N -0.95 -57.77 13.96 21.45 0.30 -57.48 16 16 Si 0.93 45.01 24.37 68.60 1.67 46.68 16 17 H -0.25 -11.26 6.89 99.48 0.69 -10.58 16 18 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 19 H -0.27 -13.06 6.53 99.48 0.65 -12.41 16 20 C -0.08 -2.52 0.30 -52.13 -0.02 -2.53 16 21 C -0.13 -3.67 7.58 71.98 0.55 -3.13 16 22 C -0.13 -4.27 7.96 71.98 0.57 -3.69 16 23 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16 24 H 0.06 1.78 6.83 -2.39 -0.02 1.76 16 25 H 0.04 1.67 3.38 -2.38 -0.01 1.67 16 26 H 0.37 6.47 7.15 -89.69 -0.64 5.83 16 27 H 0.04 1.48 3.39 -2.39 -0.01 1.47 16 28 H 0.10 3.22 6.58 -2.39 -0.02 3.21 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.04 1.39 6.49 -2.39 -0.02 1.38 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.61 5.12 -2.39 -0.01 1.60 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.29 6.93 -2.39 -0.02 1.28 16 35 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16 Total: -1.00 -65.92 249.93 3.09 -62.83 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.40 Total: 9.59 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.48 Total: -24.72 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.46 Total: -94.38 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.68 kcal Total: -65.92 3.09 -62.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238398144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.609 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds