Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86802 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47032 * 274.98307 * 3 2 1 5 5 H 1.48494 * 109.47522 * 34.98587 * 3 2 1 6 6 H 1.48498 * 109.46866 * 154.98774 * 3 2 1 7 7 C 1.40210 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99986 * 173.40286 * 7 2 1 9 9 C 1.39796 * 119.99644 * 353.67247 * 7 2 1 10 10 N 1.31710 * 125.34134 * 186.12664 * 9 7 2 11 11 C 1.30315 * 117.10476 * 180.02562 * 10 9 7 12 12 Cl 1.73604 * 122.26251 * 179.97438 * 11 10 9 13 13 C 1.36527 * 115.46617 * 0.02562 * 11 10 9 14 14 Cl 1.73599 * 125.92546 * 180.02562 * 13 11 10 15 15 S 1.76121 * 125.34725 * 5.82857 * 9 7 2 16 16 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5875 1.4121 0.5920 7 6 2.0084 -1.2143 -0.0005 8 1 3.0830 -1.2173 -0.1080 9 6 1.3157 -2.4213 0.1324 10 7 1.8714 -3.6086 0.2596 11 6 1.0703 -4.6301 0.3722 12 17 1.6583 -6.2543 0.5461 13 6 -0.2628 -4.3367 0.3430 14 17 -1.5609 -5.4823 0.4707 15 16 -0.4369 -2.5922 0.1633 16 1 -0.4850 0.8400 -0.0004 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238516300.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -19.540879 kcal Electronic energy + Delta-G solvation = -8993.610222 eV Core-core repulsion = 6843.513424 eV Total energy + Delta-G solvation = -2150.096798 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 222.932 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.54542 -37.34142 -37.15487 -36.03896 -31.09934 -28.18799 -24.77810 -21.11377 -19.90522 -18.03391 -17.22570 -16.28396 -15.41241 -14.98556 -14.75882 -13.79748 -13.29966 -12.90909 -12.70278 -12.69927 -12.39968 -11.99651 -11.96091 -11.33576 -11.24733 -10.01420 -9.67826 -9.33661 -9.07356 -6.93586 0.25703 0.69519 0.97684 1.39864 1.43328 1.62520 1.82193 2.03533 2.05728 2.18531 2.93691 4.48124 4.80572 4.94199 5.75290 6.06062 6.18448 7.36620 7.82336 Molecular weight = 222.93amu Principal moments of inertia in cm(-1) A = 0.051027 B = 0.009870 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.594196 B = 2836.062084 C = 3372.071627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.021 3.979 3 Si 1.026 2.974 4 H -0.252 1.252 5 H -0.256 1.256 6 H -0.252 1.252 7 C -0.361 4.361 8 H 0.118 0.882 9 C 0.184 3.816 10 N -0.628 5.628 11 C 0.189 3.811 12 Cl -0.042 7.042 13 C -0.368 4.368 14 Cl -0.039 7.039 15 S 0.119 5.881 16 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 2.328 0.059 2.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.202 4.202 3 Si 0.842 3.158 4 H -0.176 1.176 5 H -0.180 1.180 6 H -0.175 1.175 7 C -0.403 4.403 8 H 0.136 0.864 9 C -0.063 4.063 10 N -0.354 5.354 11 C 0.020 3.980 12 Cl -0.014 7.014 13 C -0.520 4.520 14 Cl -0.011 7.011 15 S 0.373 5.627 16 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.044 2.876 0.019 3.060 hybrid contribution 0.345 -1.025 0.155 1.093 sum -0.699 1.852 0.175 1.987 Atomic orbital electron populations 1.68639 1.09355 1.33769 1.28939 1.27413 0.95898 1.05956 0.90945 0.84489 0.78672 0.72373 0.80270 1.17629 1.18009 1.17507 1.19655 0.97366 0.87771 1.35534 0.86416 1.23806 0.91931 0.93784 0.96775 1.66436 1.35981 0.97662 1.35299 1.20713 0.87348 0.88072 1.01859 1.98269 1.89848 1.17183 1.96119 1.26893 0.90107 0.98265 1.36783 1.98171 1.47122 1.58171 1.97676 1.85292 1.09798 0.92048 1.75562 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -33.30 10.68 21.88 0.23 -33.06 13 2 C 0.02 0.85 5.49 85.34 0.47 1.32 13 3 Si 1.03 30.10 29.57 68.60 2.03 32.13 13 4 H -0.25 -7.06 7.11 99.48 0.71 -6.35 13 5 H -0.26 -7.02 7.11 99.48 0.71 -6.32 13 6 H -0.25 -7.34 7.11 99.48 0.71 -6.64 13 7 C -0.36 -17.11 9.44 23.13 0.22 -16.89 13 8 H 0.12 5.31 7.86 -2.91 -0.02 5.29 13 9 C 0.18 9.64 7.12 85.09 0.61 10.25 13 10 N -0.63 -33.72 10.59 -185.49 -1.96 -35.68 13 11 C 0.19 9.51 7.31 84.52 0.62 10.13 13 12 Cl -0.04 -1.79 28.85 -2.72 -0.08 -1.87 13 13 C -0.37 -17.92 7.28 67.42 0.49 -17.43 13 14 Cl -0.04 -1.62 28.90 -2.72 -0.08 -1.70 13 15 S 0.12 5.88 20.40 -56.49 -1.15 4.72 13 16 H 0.32 11.80 8.29 -92.71 -0.77 11.03 13 Total: -1.00 -53.78 203.09 2.72 -51.06 By element: Atomic # 1 Polarization: -4.31 SS G_CDS: 1.33 Total: -2.98 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 2.40 Total: -12.62 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.73 Total: -68.74 kcal Atomic # 14 Polarization: 30.10 SS G_CDS: 2.03 Total: 32.13 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.15 Total: 4.72 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.16 Total: -3.56 kcal Total: -53.78 2.72 -51.06 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238516300.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.516 kcal (2) G-P(sol) polarization free energy of solvation -53.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds