Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.46732 * 30.00451 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99799 * 3 2 1 7 7 C 1.40153 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.41193 * 119.99892 * 0.28288 * 7 2 1 10 10 N 1.31916 * 126.54079 * 359.73932 * 9 7 2 11 11 O 1.41312 * 109.38022 * 179.97438 * 10 9 7 12 12 C 1.34942 * 109.71760 * 0.02562 * 11 10 9 13 13 C 1.38998 * 132.98067 * 180.02562 * 12 11 10 14 14 C 1.37957 * 119.93534 * 179.29874 * 13 12 11 15 15 Cl 1.73601 * 119.73942 * 180.20634 * 14 13 12 16 16 C 1.38803 * 120.51884 * 0.62117 * 14 13 12 17 17 C 1.37794 * 120.27230 * 359.58779 * 16 14 13 18 18 C 1.39274 * 119.74679 * 0.02562 * 17 16 14 19 19 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.02308 * 0.02562 * 13 12 11 21 21 H 1.08001 * 119.86596 * 179.60391 * 16 14 13 22 22 H 1.08001 * 120.12788 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7001 7 6 2.0075 -1.2138 0.0005 8 1 3.0875 -1.2137 0.0001 9 6 1.3015 -2.4365 -0.0049 10 7 -0.0090 -2.5868 -0.0060 11 8 -0.3231 -3.9645 -0.0127 12 6 0.8143 -4.6907 -0.0152 13 6 1.0658 -6.0577 -0.0218 14 6 2.3661 -6.5185 -0.0375 15 17 2.6742 -8.2268 -0.0511 16 6 3.4299 -5.6269 -0.0338 17 6 3.1979 -4.2687 -0.0230 18 6 1.8896 -3.7912 -0.0151 19 1 -0.4850 0.8400 -0.0004 20 1 0.2439 -6.7584 -0.0265 21 1 4.4437 -5.9992 -0.0398 22 1 4.0273 -3.5770 -0.0206 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238535532.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = 16.238736 kcal Electronic energy + Delta-G solvation = -12299.047701 eV Core-core repulsion = 9846.015497 eV Total energy + Delta-G solvation = -2453.032204 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.87701 -38.65754 -37.12958 -36.14078 -33.55808 -31.23586 -30.35792 -28.37422 -24.01516 -23.39800 -22.28041 -19.26677 -18.00949 -17.55739 -16.72592 -16.59749 -16.30413 -15.11465 -14.92368 -14.45732 -14.01532 -13.66282 -13.13707 -13.10782 -12.82613 -12.29547 -12.22675 -11.96642 -11.86719 -11.79923 -11.20837 -10.81304 -9.54282 -9.43551 -8.72250 -6.97126 -0.11743 0.37463 0.94778 1.32398 1.41494 1.59603 1.89293 2.17769 2.59978 2.61188 3.23899 3.75890 3.91084 4.07834 4.08675 4.46263 4.76253 4.93342 5.09743 5.12083 5.21094 5.40507 5.71568 6.05523 6.41079 6.59948 7.44449 8.26549 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.060599 B = 0.007157 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.943773 B = 3911.158289 C = 4363.241165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.015 3.985 3 Si 1.011 2.989 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.241 1.241 7 C -0.439 4.439 8 H 0.118 0.882 9 C 0.184 3.816 10 N -0.409 5.409 11 O -0.187 6.187 12 C 0.064 3.936 13 C -0.148 4.148 14 C 0.010 3.990 15 Cl -0.045 7.045 16 C -0.149 4.149 17 C -0.033 4.033 18 C -0.201 4.201 19 H 0.292 0.708 20 H 0.147 0.853 21 H 0.173 0.827 22 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -6.652 -0.059 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.205 4.205 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.164 1.164 7 C -0.478 4.478 8 H 0.136 0.864 9 C 0.030 3.970 10 N -0.187 5.187 11 O -0.181 6.181 12 C 0.009 3.991 13 C -0.168 4.168 14 C -0.017 4.017 15 Cl -0.016 7.016 16 C -0.168 4.168 17 C -0.053 4.053 18 C -0.204 4.204 19 H 0.102 0.898 20 H 0.165 0.835 21 H 0.191 0.809 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.116 -6.396 -0.054 10.334 hybrid contribution 0.222 0.214 -0.016 0.309 sum 8.338 -6.183 -0.070 10.381 Atomic orbital electron populations 1.69939 1.09792 1.31200 1.30897 1.27323 0.95774 1.05854 0.91579 0.84770 0.78910 0.73630 0.79816 1.18289 1.19578 1.16405 1.19506 0.95699 0.87621 1.44970 0.86408 1.21674 0.90660 0.92887 0.91796 1.81292 1.13965 0.80454 1.42960 1.88971 1.27848 1.18598 1.82699 1.20635 0.88349 0.93941 0.96130 1.19811 0.97262 0.90334 1.09405 1.20557 0.93138 0.85869 1.02170 1.98348 1.95793 1.10691 1.96747 1.21090 0.99603 0.90916 1.05161 1.20867 0.94326 0.95774 0.94302 1.21550 0.96220 0.92254 1.10386 0.89761 0.83504 0.80930 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.67 11.97 21.86 0.26 -43.41 14 2 C 0.01 0.74 5.50 85.33 0.47 1.21 14 3 Si 1.01 35.87 29.56 68.60 2.03 37.90 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 14 6 H -0.24 -7.81 7.11 99.48 0.71 -7.10 14 7 C -0.44 -22.73 9.44 23.46 0.22 -22.50 14 8 H 0.12 5.26 7.85 -2.91 -0.02 5.24 14 9 C 0.18 10.37 6.95 42.35 0.29 10.67 14 10 N -0.41 -25.37 11.13 -48.34 -0.54 -25.91 14 11 O -0.19 -10.74 12.04 28.72 0.35 -10.40 14 12 C 0.06 3.11 7.45 22.93 0.17 3.28 14 13 C -0.15 -5.58 9.83 22.39 0.22 -5.36 14 14 C 0.01 0.33 6.32 22.34 0.14 0.47 14 15 Cl -0.04 -1.11 28.94 -2.72 -0.08 -1.18 14 16 C -0.15 -4.39 9.81 22.30 0.22 -4.17 14 17 C -0.03 -1.19 10.09 22.41 0.23 -0.96 14 18 C -0.20 -9.58 6.30 -20.06 -0.13 -9.70 14 19 H 0.29 14.40 8.29 -92.71 -0.77 13.63 14 20 H 0.15 4.93 8.06 -2.91 -0.02 4.90 14 21 H 0.17 3.62 8.06 -2.91 -0.02 3.60 14 22 H 0.16 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -66.97 226.96 5.11 -61.85 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.26 Total: 8.22 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 1.84 Total: -27.08 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.28 Total: -69.31 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.35 Total: -10.40 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.18 kcal Total: -66.97 5.11 -61.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238535532.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds