Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86795 * 119.99715 * 2 1 4 4 H 1.48498 * 109.47264 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.46822 * 120.00223 * 3 2 1 6 6 H 1.48500 * 109.47290 * 239.99828 * 3 2 1 7 7 C 1.39816 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00188 * 3.68072 * 7 2 1 9 9 C 1.41273 * 119.99888 * 183.67999 * 7 2 1 10 10 C 1.39555 * 126.19432 * 185.90816 * 9 7 2 11 11 N 1.35161 * 106.85213 * 179.86982 * 10 9 7 12 12 N 1.39945 * 132.34906 * 180.02562 * 11 10 9 13 13 C 1.30671 * 120.70163 * 180.35183 * 12 11 10 14 14 Cl 1.73604 * 119.54002 * 180.02562 * 13 12 11 15 15 C 1.40329 * 120.92477 * 359.97438 * 13 12 11 16 16 C 1.36048 * 120.15373 * 0.05741 * 15 13 12 17 17 C 1.37448 * 107.69550 * 0.39218 * 11 10 9 18 18 N 1.32368 * 108.87426 * 359.74652 * 17 11 10 19 19 H 0.97005 * 119.99617 * 174.80961 * 1 2 3 20 20 H 1.08003 * 126.57574 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.92486 * 180.02562 * 15 13 12 22 22 H 1.07999 * 120.40355 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 1.2781 2.7464 0.0006 5 1 3.0969 1.6964 1.2126 6 1 3.0969 1.6965 -1.2125 7 6 2.0083 -1.2108 -0.0005 8 1 1.4700 -2.1452 -0.0610 9 6 3.4188 -1.2121 0.0780 10 6 4.2491 -2.3287 -0.0283 11 7 5.5197 -1.8859 0.1001 12 7 6.7543 -2.5444 0.0771 13 6 7.8681 -1.8793 0.2343 14 17 9.3830 -2.7265 0.1999 15 6 7.8569 -0.4897 0.4295 16 6 6.6769 0.1868 0.4588 17 6 5.4708 -0.5256 0.2906 18 7 4.2057 -0.1362 0.2749 19 1 -0.4850 -0.8367 -0.0760 20 1 3.9365 -3.3506 -0.1851 21 1 8.7871 0.0439 0.5572 22 1 6.6636 1.2562 0.6091 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238538071.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = 78.147295 kcal Electronic energy + Delta-G solvation = -12411.713403 eV Core-core repulsion = 9993.658506 eV Total energy + Delta-G solvation = -2418.054896 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.09832 -39.17839 -37.69683 -35.52679 -34.59325 -32.15537 -30.48275 -27.79536 -24.74317 -23.95658 -21.95751 -20.34052 -18.98123 -18.46421 -17.14167 -16.97224 -15.76020 -15.30802 -14.96826 -14.62816 -14.55103 -14.34710 -13.77552 -13.04909 -12.75303 -12.51082 -12.21524 -11.94968 -11.66053 -11.62479 -11.20031 -10.25448 -10.16039 -9.32047 -9.17097 -6.62976 -0.58637 -0.04268 0.23357 1.44544 1.50499 1.61345 1.97435 2.05086 2.34505 2.45693 3.21529 3.28928 3.36173 3.70396 4.26684 4.51498 4.75360 4.88861 4.93825 5.02280 5.32072 5.52596 6.02198 6.25389 6.54962 6.75286 7.09160 8.08396 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.066073 B = 0.007868 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.669733 B = 3557.901198 C = 3965.338205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.016 3.984 3 Si 1.156 2.844 4 H -0.309 1.309 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.192 3.808 10 C -0.159 4.159 11 N -0.243 5.243 12 N -0.303 5.303 13 C 0.179 3.821 14 Cl 0.033 6.967 15 C -0.165 4.165 16 C -0.009 4.009 17 C 0.146 3.854 18 N -0.550 5.550 19 H 0.278 0.722 20 H 0.178 0.822 21 H 0.207 0.793 22 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.849 0.442 0.868 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.197 4.197 3 Si 0.984 3.016 4 H -0.240 1.240 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.546 4.546 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.295 4.295 11 N -0.017 5.017 12 N -0.120 5.120 13 C -0.017 4.017 14 Cl 0.061 6.939 15 C -0.190 4.190 16 C -0.037 4.037 17 C -0.096 4.096 18 N -0.281 5.281 19 H 0.088 0.912 20 H 0.195 0.805 21 H 0.224 0.776 22 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 17.204 1.683 0.875 17.308 hybrid contribution 0.031 -2.599 -0.156 2.604 sum 17.234 -0.916 0.719 17.274 Atomic orbital electron populations 1.70724 1.08080 1.32254 1.36302 1.28181 0.95730 1.07107 0.88726 0.82130 0.71128 0.68736 0.79654 1.23951 1.19119 1.21358 1.19794 0.88980 0.96100 1.49742 0.91371 1.18784 0.93654 0.86896 0.94191 1.22555 0.78628 1.01164 1.27161 1.45908 1.03366 1.07237 1.45210 1.74924 0.89490 1.25229 1.22331 1.22996 0.88631 0.92466 0.97568 1.98428 1.20764 1.78460 1.96275 1.21564 1.01086 0.90739 1.05619 1.20997 0.86076 1.02567 0.94045 1.21973 0.95736 0.82655 1.09226 1.70073 0.99158 1.29178 1.29718 0.91190 0.80490 0.77629 0.78794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.46 13.66 21.81 0.30 -48.16 14 2 C 0.02 0.93 5.51 85.21 0.47 1.40 14 3 Si 1.16 56.27 25.85 68.60 1.77 58.04 14 4 H -0.31 -14.49 7.11 99.48 0.71 -13.79 14 5 H -0.27 -12.62 6.75 99.48 0.67 -11.94 14 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 14 7 C -0.51 -29.18 9.82 23.40 0.23 -28.95 14 8 H 0.07 3.95 8.05 -2.91 -0.02 3.92 14 9 C 0.19 10.33 6.40 39.76 0.25 10.58 14 10 C -0.16 -7.73 12.03 84.50 1.02 -6.71 14 11 N -0.24 -10.75 3.96 -189.56 -0.75 -11.50 14 12 N -0.30 -11.32 11.88 -49.56 -0.59 -11.91 14 13 C 0.18 5.04 7.38 85.37 0.63 5.67 14 14 Cl 0.03 0.68 29.11 -2.72 -0.08 0.60 14 15 C -0.16 -3.79 9.81 22.27 0.22 -3.57 14 16 C -0.01 -0.27 10.12 22.46 0.23 -0.04 14 17 C 0.15 6.26 7.85 134.08 1.05 7.31 14 18 N -0.55 -27.76 6.54 -186.46 -1.22 -28.98 14 19 H 0.28 15.43 8.72 -92.70 -0.81 14.62 14 20 H 0.18 7.88 8.06 -2.91 -0.02 7.86 14 21 H 0.21 2.50 8.06 -2.91 -0.02 2.48 14 22 H 0.19 4.25 8.06 -2.91 -0.02 4.23 14 Total: -1.00 -66.67 221.85 4.71 -61.95 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: 1.18 Total: -5.73 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.10 Total: -14.31 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -2.26 Total: -100.55 kcal Atomic # 14 Polarization: 56.27 SS G_CDS: 1.77 Total: 58.04 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -66.67 4.71 -61.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238538071.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.102 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds