Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30472 * 1 3 3 Si 1.86806 * 120.00087 * 2 1 4 4 H 1.48500 * 109.46837 * 239.99548 * 3 2 1 5 5 H 1.48494 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46937 * 119.99530 * 3 2 1 7 7 C 1.40472 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.41685 * 120.00207 * 0.02562 * 7 2 1 10 10 O 1.21746 * 120.00033 * 0.02562 * 9 7 2 11 11 C 1.48013 * 119.99897 * 179.97438 * 9 7 2 12 12 N 1.32924 * 119.58366 * 0.02562 * 11 9 7 13 13 C 1.31263 * 121.84467 * 179.97438 * 12 11 9 14 14 C 1.40165 * 120.76951 * 0.02562 * 13 12 11 15 15 C 1.47280 * 120.45512 * 180.02562 * 14 13 12 16 16 O 1.21237 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.40078 * 119.08511 * 359.97438 * 14 13 12 18 18 C 1.38654 * 118.32191 * 0.02562 * 17 14 13 19 19 F 1.35096 * 120.42967 * 179.97438 * 18 17 14 20 20 H 0.96999 * 119.99686 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.61587 * 180.27929 * 13 12 11 22 22 H 1.08007 * 120.00099 * 180.02562 * 15 14 13 23 23 H 1.07997 * 120.83978 * 179.97438 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 3.0926 1.6963 -1.2125 5 1 1.2738 2.7464 -0.0006 6 1 3.0924 1.6964 1.2126 7 6 2.0070 -1.2165 0.0005 8 1 3.0871 -1.2165 0.0010 9 6 1.2986 -2.4436 0.0005 10 8 0.0812 -2.4436 -0.0004 11 6 2.0387 -3.7254 0.0005 12 7 3.3679 -3.7157 0.0011 13 6 4.0686 -4.8257 0.0016 14 6 3.4329 -6.0749 0.0011 15 6 4.2259 -7.3160 0.0022 16 8 5.4371 -7.2615 0.0041 17 6 2.0331 -6.1267 0.0005 18 6 1.3307 -4.9312 0.0000 19 9 -0.0203 -4.9314 -0.0010 20 1 -0.4850 0.8401 -0.0004 21 1 5.1475 -4.7758 0.0066 22 1 3.7285 -8.2747 0.0014 23 1 1.5141 -7.0737 -0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585455.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = -107.319884 kcal Electronic energy + Delta-G solvation = -14232.007138 eV Core-core repulsion = 11345.280654 eV Total energy + Delta-G solvation = -2886.726483 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.043 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.85505 -41.30673 -39.66625 -38.45442 -34.91427 -33.89393 -31.99147 -29.33298 -26.70853 -24.82682 -23.09113 -21.88220 -19.14684 -18.58726 -18.06815 -17.75678 -16.85115 -16.73268 -16.42578 -15.85074 -15.33495 -15.16688 -14.86826 -14.66144 -14.07931 -13.70962 -13.65773 -13.34448 -12.74507 -12.50643 -12.09659 -11.44394 -11.06312 -10.94159 -10.51728 -9.97659 -9.71832 -8.46665 -7.17727 -0.84908 0.02531 1.18300 1.36425 1.43693 1.52647 2.11795 2.18017 2.67820 2.86929 3.26704 3.38630 3.52128 3.64070 3.72886 4.06434 4.43220 4.62975 4.72917 4.80473 5.11508 5.51541 5.97515 6.40528 6.52481 6.57763 6.81318 8.06487 8.35028 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.008085 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.416160 B = 3462.259934 C = 4164.834005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.018 3.982 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.252 1.252 7 C -0.505 4.505 8 H 0.095 0.905 9 C 0.350 3.650 10 O -0.577 6.577 11 C 0.071 3.929 12 N -0.464 5.464 13 C 0.126 3.874 14 C -0.221 4.221 15 C 0.415 3.585 16 O -0.490 6.490 17 C -0.040 4.040 18 C 0.031 3.969 19 F -0.129 7.129 20 H 0.288 0.712 21 H 0.185 0.815 22 H 0.177 0.823 23 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -10.669 0.005 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.202 4.202 3 Si 0.819 3.181 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.176 1.176 7 C -0.536 4.536 8 H 0.113 0.887 9 C 0.250 3.750 10 O -0.469 6.469 11 C -0.065 4.065 12 N -0.174 5.174 13 C -0.035 4.035 14 C -0.225 4.225 15 C 0.274 3.726 16 O -0.364 6.364 17 C -0.066 4.066 18 C 0.009 3.991 19 F -0.108 7.108 20 H 0.099 0.901 21 H 0.202 0.798 22 H 0.193 0.807 23 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.865 -9.792 0.006 11.958 hybrid contribution -0.747 0.221 -0.002 0.779 sum 6.118 -9.571 0.004 11.359 Atomic orbital electron populations 1.70042 1.09937 1.30578 1.29605 1.27400 0.95630 1.05711 0.91445 0.85007 0.78507 0.73889 0.80680 1.17641 1.18652 1.17630 1.21454 0.96458 0.91705 1.43955 0.88695 1.18600 0.88097 0.87194 0.81100 1.90524 1.15809 1.88456 1.52124 1.23603 0.91068 0.96974 0.94869 1.67886 1.05894 1.32124 1.11518 1.23767 1.01704 0.86987 0.91046 1.22364 0.94397 0.98870 1.06839 1.24608 0.87731 0.92442 0.67836 1.90541 1.18957 1.90591 1.36295 1.22237 0.93303 0.97836 0.93212 1.19212 0.78410 0.95675 1.05774 1.91524 1.28391 1.97227 1.93617 0.90141 0.79799 0.80709 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -45.46 11.73 21.91 0.26 -45.21 14 2 C 0.02 1.00 5.50 85.44 0.47 1.47 14 3 Si 1.00 39.78 29.56 68.60 2.03 41.81 14 4 H -0.25 -9.55 7.11 99.48 0.71 -8.85 14 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 14 7 C -0.51 -29.31 9.01 23.67 0.21 -29.10 14 8 H 0.09 5.17 7.35 -2.91 -0.02 5.15 14 9 C 0.35 21.16 6.92 25.72 0.18 21.34 14 10 O -0.58 -38.76 13.84 -4.50 -0.06 -38.82 14 11 C 0.07 3.48 6.74 41.96 0.28 3.76 14 12 N -0.46 -20.13 9.40 -183.41 -1.72 -21.86 14 13 C 0.13 4.10 10.76 85.25 0.92 5.02 14 14 C -0.22 -5.47 5.89 -19.99 -0.12 -5.58 14 15 C 0.41 6.81 11.48 70.20 0.81 7.61 14 16 O -0.49 -11.88 17.18 -2.90 -0.05 -11.93 14 17 C -0.04 -1.05 9.92 22.82 0.23 -0.82 14 18 C 0.03 1.29 7.31 22.76 0.17 1.46 14 19 F -0.13 -5.97 15.52 44.97 0.70 -5.27 14 20 H 0.29 14.98 8.29 -92.71 -0.77 14.21 14 21 H 0.19 5.11 7.65 -2.91 -0.02 5.09 14 22 H 0.18 0.78 8.06 -2.91 -0.02 0.76 14 23 H 0.21 2.92 8.06 -2.91 -0.02 2.90 14 Total: -1.00 -80.25 231.51 5.55 -74.70 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.26 Total: 1.42 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 3.14 Total: 5.16 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -1.47 Total: -67.06 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.11 Total: -50.76 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.70 Total: -5.27 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -80.25 5.55 -74.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585455.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.621 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds