Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47023 * 2 1 4 4 C 1.52999 * 109.47399 * 239.99863 * 2 1 3 5 5 N 1.46901 * 109.47042 * 60.00156 * 4 2 1 6 6 C 1.46898 * 111.00358 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47553 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99784 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47116 * 90.00080 * 11 9 7 13 13 H 1.48497 * 109.46997 * 209.99985 * 11 9 7 14 14 H 1.48497 * 109.47160 * 330.00138 * 11 9 7 15 15 C 1.50695 * 109.47080 * 119.99875 * 2 1 3 16 16 C 1.40900 * 126.29168 * 120.29774 * 15 2 1 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 2 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 300.00164 * 15 2 1 21 21 H 1.08996 * 109.47713 * 300.00004 * 1 2 3 22 22 H 1.09007 * 109.47400 * 60.00351 * 1 2 3 23 23 H 1.08999 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47334 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47254 * 299.99883 * 3 2 1 26 26 H 1.08997 * 109.47332 * 59.99768 * 3 2 1 27 27 H 1.09003 * 109.47222 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.47145 * 300.00035 * 4 2 1 29 29 H 1.00900 * 111.00466 * 56.03963 * 5 4 2 30 30 H 1.09005 * 109.46663 * 300.00099 * 6 5 4 31 31 H 1.08993 * 109.47179 * 59.99313 * 6 5 4 32 32 H 0.96991 * 120.00183 * 180.02562 * 10 9 7 33 33 H 1.07999 * 126.29093 * 359.97438 * 16 15 2 34 34 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 35 35 H 1.07990 * 125.89063 * 359.97438 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5504 -0.0288 -2.4487 6 6 2.0209 -0.6952 -3.6703 7 6 1.4994 0.0414 -4.8771 8 1 0.8806 0.9173 -4.7494 9 6 1.8130 -0.4022 -6.1444 10 7 2.5669 -1.4686 -6.2999 11 14 1.1671 0.5113 -7.6402 12 1 2.1391 1.5616 -8.0367 13 1 0.9849 -0.4436 -8.7628 14 1 -0.1362 1.1420 -7.3104 15 6 2.0322 -0.7104 1.2304 16 6 2.8504 -1.8572 1.2557 17 6 3.0659 -2.1708 2.5494 18 7 2.4177 -1.2547 3.3238 19 1 2.4080 -1.2402 4.2937 20 6 1.7859 -0.3620 2.5097 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9564 0.8899 27 1 3.1300 -0.7208 -1.2494 28 1 1.6767 -1.7489 -1.2492 29 1 1.8197 0.9436 -2.4402 30 1 3.1108 -0.6954 -3.6872 31 1 1.6572 -1.7225 -3.6869 32 1 2.7879 -1.7805 -7.1913 33 1 3.2325 -2.3889 0.3969 34 1 3.6543 -3.0016 2.9100 35 1 1.1914 0.4794 2.8335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258984146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = 32.812987 kcal Electronic energy + Delta-G solvation = -14987.488178 eV Core-core repulsion = 12599.683468 eV Total energy + Delta-G solvation = -2387.804710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01761 -37.08080 -33.77981 -31.86815 -30.18163 -28.23217 -26.84221 -26.76301 -24.42033 -21.74831 -20.56194 -20.24830 -18.54898 -17.42448 -16.17434 -14.78118 -14.51586 -14.12713 -14.01842 -13.70163 -13.48891 -12.84919 -12.67289 -12.37887 -12.21953 -12.03268 -11.64813 -11.24166 -11.09247 -10.76365 -10.73842 -10.39656 -10.37026 -10.09561 -9.71401 -9.05127 -8.50074 -8.40177 -7.92822 -7.10662 -5.95491 -3.96894 2.41656 3.20080 3.36693 3.42445 3.44743 3.47444 4.49653 5.14974 5.18538 5.35613 5.40296 5.43205 5.52487 5.70297 5.81929 5.91874 6.07866 6.17092 6.29557 6.35421 6.43588 6.50735 6.54195 6.71338 6.85182 6.91753 7.17863 7.30329 7.39758 7.55451 7.69647 7.88049 8.23850 8.54356 8.75525 9.13168 9.67679 11.15760 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.055774 B = 0.005341 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.904990 B = 5241.437725 C = 5544.956569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.008 3.992 3 C -0.137 4.137 4 C 0.075 3.925 5 N -0.689 5.689 6 C 0.194 3.806 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.138 4.138 16 C -0.190 4.190 17 C -0.026 4.026 18 N -0.566 5.566 19 H 0.409 0.591 20 C -0.022 4.022 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.326 0.674 30 H -0.016 1.016 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 1.716 18.523 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 C -0.194 4.194 4 C -0.055 4.055 5 N -0.320 5.320 6 C 0.067 3.933 7 C -0.549 4.549 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.145 4.145 16 C -0.215 4.215 17 C -0.156 4.156 18 N -0.161 5.161 19 H 0.245 0.755 20 C -0.152 4.152 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.002 0.998 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.771 1.266 18.519 18.578 hybrid contribution 0.764 0.513 -0.434 1.018 sum -0.007 1.779 18.084 18.172 Atomic orbital electron populations 1.21703 0.93818 1.01478 1.01052 1.18941 0.95526 0.93842 0.91009 1.21867 1.00563 0.95612 1.01383 1.21849 0.95950 0.97966 0.89732 1.60679 1.63608 1.05682 1.02030 1.19526 0.92992 0.95116 0.85676 1.21212 1.30986 1.12425 0.90324 0.92021 1.24992 0.95335 0.95208 0.99115 1.69969 1.37550 1.23791 1.22566 0.86503 0.79295 0.79378 0.82251 1.20804 1.21315 1.19785 1.19541 1.03020 0.98573 0.93399 1.20949 1.04711 0.99997 0.95861 1.21780 1.04664 0.97867 0.91281 1.41899 1.41848 1.23967 1.08373 0.75517 1.21506 1.05120 0.98336 0.90226 0.94388 0.90991 0.93286 0.93246 0.91817 0.93402 0.96494 0.91881 0.85612 0.99802 0.95540 0.93018 0.84735 0.82395 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.20 37.15 0.30 -1.58 16 2 C 0.01 0.12 0.75 -155.66 -0.12 0.01 16 3 C -0.14 -1.97 8.02 37.16 0.30 -1.67 16 4 C 0.08 1.44 3.59 -3.82 -0.01 1.42 16 5 N -0.69 -15.28 5.70 -115.06 -0.66 -15.93 16 6 C 0.19 5.27 5.44 -4.98 -0.03 5.24 16 7 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 11 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 15 C -0.14 -2.00 4.76 -104.82 -0.50 -2.50 16 16 C -0.19 -2.73 9.80 -39.78 -0.39 -3.12 16 17 C -0.03 -0.29 11.94 -16.75 -0.20 -0.49 16 18 N -0.57 -5.65 6.07 -12.85 -0.08 -5.73 16 19 H 0.41 2.61 8.96 -40.82 -0.37 2.24 16 20 C -0.02 -0.26 11.28 -16.75 -0.19 -0.45 16 21 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 22 H 0.07 1.20 7.60 -51.93 -0.39 0.81 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.95 6.57 -51.93 -0.34 0.61 16 26 H 0.05 0.59 8.01 -51.93 -0.42 0.17 16 27 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 16 28 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 29 H 0.33 6.92 6.76 -39.29 -0.27 6.65 16 30 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 33 H 0.13 2.00 7.50 -52.49 -0.39 1.60 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -31.99 288.69 -7.42 -39.41 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.51 Total: 4.39 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.25 Total: -16.80 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.00 Total: -48.42 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.99 -7.42 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258984146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.224 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds