Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47023 * 2 1 4 4 C 1.52999 * 109.47399 * 239.99863 * 2 1 3 5 5 N 1.46901 * 109.47042 * 60.00156 * 4 2 1 6 6 C 1.46898 * 111.00358 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47553 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99784 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47116 * 90.00080 * 11 9 7 13 13 H 1.48497 * 109.46997 * 209.99985 * 11 9 7 14 14 H 1.48497 * 109.47160 * 330.00138 * 11 9 7 15 15 C 1.50695 * 109.47080 * 119.99875 * 2 1 3 16 16 C 1.40900 * 126.29168 * 120.29774 * 15 2 1 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 2 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 300.00164 * 15 2 1 21 21 H 1.08996 * 109.47713 * 300.00004 * 1 2 3 22 22 H 1.09007 * 109.47400 * 60.00351 * 1 2 3 23 23 H 1.08999 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47334 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47254 * 299.99883 * 3 2 1 26 26 H 1.08997 * 109.47332 * 59.99768 * 3 2 1 27 27 H 1.09003 * 109.47222 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.47145 * 300.00035 * 4 2 1 29 29 H 1.00900 * 111.00466 * 56.03963 * 5 4 2 30 30 H 1.09005 * 109.46663 * 300.00099 * 6 5 4 31 31 H 1.08993 * 109.47179 * 59.99313 * 6 5 4 32 32 H 0.96991 * 120.00183 * 180.02562 * 10 9 7 33 33 H 1.07999 * 126.29093 * 359.97438 * 16 15 2 34 34 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 35 35 H 1.07990 * 125.89063 * 359.97438 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5504 -0.0288 -2.4487 6 6 2.0209 -0.6952 -3.6703 7 6 1.4994 0.0414 -4.8771 8 1 0.8806 0.9173 -4.7494 9 6 1.8130 -0.4022 -6.1444 10 7 2.5669 -1.4686 -6.2999 11 14 1.1671 0.5113 -7.6402 12 1 2.1391 1.5616 -8.0367 13 1 0.9849 -0.4436 -8.7628 14 1 -0.1362 1.1420 -7.3104 15 6 2.0322 -0.7104 1.2304 16 6 2.8504 -1.8572 1.2557 17 6 3.0659 -2.1708 2.5494 18 7 2.4177 -1.2547 3.3238 19 1 2.4080 -1.2402 4.2937 20 6 1.7859 -0.3620 2.5097 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9564 0.8899 27 1 3.1300 -0.7208 -1.2494 28 1 1.6767 -1.7489 -1.2492 29 1 1.8197 0.9436 -2.4402 30 1 3.1108 -0.6954 -3.6872 31 1 1.6572 -1.7225 -3.6869 32 1 2.7879 -1.7805 -7.1913 33 1 3.2325 -2.3889 0.3969 34 1 3.6543 -3.0016 2.9100 35 1 1.1914 0.4794 2.8335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258984146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = 11.384827 kcal Electronic energy + Delta-G solvation = -14988.417373 eV Core-core repulsion = 12599.683468 eV Total energy + Delta-G solvation = -2388.733904 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97782 -38.53462 -35.69689 -33.87405 -31.17933 -29.51257 -28.57566 -27.96913 -26.13403 -23.71515 -21.87581 -21.29822 -19.48920 -18.86406 -18.12265 -16.74077 -16.26025 -15.53473 -15.33768 -14.91442 -14.52075 -14.18472 -14.11550 -14.08375 -13.75185 -13.30609 -13.08136 -12.87986 -12.71524 -12.62895 -12.44387 -12.05892 -11.77366 -11.68221 -11.41764 -11.08701 -10.64580 -9.48775 -9.05419 -8.87116 -8.20620 -6.32331 1.42238 1.44760 1.50791 1.56692 2.14565 2.41893 2.65589 3.12390 3.66164 4.01906 4.17061 4.27474 4.46421 4.54706 4.65801 4.77475 4.85981 4.90533 4.97876 5.08903 5.13369 5.17476 5.22854 5.30108 5.34170 5.53426 5.61642 5.65070 5.70828 6.04286 6.13514 6.30711 6.48864 6.76325 6.93192 6.95990 7.38823 8.91483 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.055774 B = 0.005341 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.904990 B = 5241.437725 C = 5544.956569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.016 3.984 3 C -0.133 4.133 4 C 0.081 3.919 5 N -0.681 5.681 6 C 0.208 3.792 7 C -0.533 4.533 8 H 0.067 0.933 9 C -0.001 4.001 10 N -0.937 5.937 11 Si 0.977 3.023 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.263 1.263 15 C -0.171 4.171 16 C -0.235 4.235 17 C -0.010 4.010 18 N -0.549 5.549 19 H 0.431 0.569 20 C -0.009 4.009 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.044 0.956 29 H 0.335 0.665 30 H -0.045 1.045 31 H -0.005 1.005 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.189 0.811 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 3.189 20.156 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.015 3.985 3 C -0.190 4.190 4 C -0.049 4.049 5 N -0.312 5.312 6 C 0.080 3.920 7 C -0.572 4.572 8 H 0.085 0.915 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.801 3.199 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.178 4.178 16 C -0.260 4.260 17 C -0.142 4.142 18 N -0.145 5.145 19 H 0.270 0.730 20 C -0.140 4.140 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.022 0.978 28 H 0.063 0.937 29 H 0.153 0.847 30 H -0.027 1.027 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.206 0.794 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.587 2.749 20.206 20.453 hybrid contribution 1.058 -0.015 -0.859 1.363 sum -0.529 2.733 19.346 19.546 Atomic orbital electron populations 1.21648 0.93388 1.00789 1.01678 1.18806 0.95740 0.94325 0.89634 1.21835 1.00094 0.94713 1.02365 1.21850 0.95136 0.97420 0.90464 1.60569 1.63288 1.05997 1.01349 1.19187 0.90981 0.93891 0.87929 1.21547 1.31480 1.12878 0.91258 0.91504 1.26015 0.95238 0.95986 1.02680 1.70111 1.38559 1.25370 1.23676 0.85273 0.79031 0.78060 0.77558 1.19588 1.20743 1.18685 1.19480 1.04859 0.99454 0.93999 1.20996 1.06875 1.01225 0.96874 1.22109 1.03618 0.98139 0.90311 1.41907 1.40390 1.22764 1.09433 0.72993 1.21786 1.04287 0.98678 0.89272 0.91246 0.92759 0.94624 0.93972 0.92716 0.90445 0.97770 0.93748 0.84694 1.02723 0.98715 0.92648 0.86992 0.79447 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 8.20 71.98 0.59 -2.91 16 2 C 0.02 0.50 0.75 -52.93 -0.04 0.46 16 3 C -0.13 -3.65 8.02 71.98 0.58 -3.08 16 4 C 0.08 3.27 3.59 86.30 0.31 3.58 16 5 N -0.68 -31.45 5.70 -517.94 -2.95 -34.40 16 6 C 0.21 11.92 5.44 85.56 0.47 12.38 16 7 C -0.53 -31.65 9.32 25.60 0.24 -31.41 16 8 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 9 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 10 N -0.94 -58.62 13.29 21.45 0.28 -58.34 16 11 Si 0.98 45.38 29.54 68.60 2.03 47.40 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 C -0.17 -4.80 4.76 -19.99 -0.10 -4.89 16 16 C -0.23 -6.80 9.80 22.14 0.22 -6.58 16 17 C -0.01 -0.21 11.94 83.21 0.99 0.78 16 18 N -0.55 -9.09 6.07 -194.56 -1.18 -10.27 16 19 H 0.43 3.67 8.96 -92.71 -0.83 2.84 16 20 C -0.01 -0.18 11.28 83.22 0.94 0.75 16 21 H 0.07 1.61 8.01 -2.39 -0.02 1.59 16 22 H 0.05 1.79 7.60 -2.38 -0.02 1.77 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.58 6.57 -2.39 -0.02 1.57 16 26 H 0.08 1.67 8.01 -2.39 -0.02 1.65 16 27 H 0.00 0.18 7.99 -2.39 -0.02 0.16 16 28 H 0.04 1.92 8.00 -2.39 -0.02 1.91 16 29 H 0.33 14.56 6.76 -89.69 -0.61 13.96 16 30 H -0.04 -2.77 8.14 -2.38 -0.02 -2.79 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.11 3.62 7.50 -2.91 -0.02 3.60 16 34 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.19 2.72 8.06 -2.92 -0.02 2.70 16 Total: -1.00 -70.98 288.69 2.47 -68.51 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.37 Total: 17.63 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.66 Total: -30.53 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -3.85 Total: -103.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.98 2.47 -68.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258984146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.898 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds