Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.33737 * 300.00202 * 9 7 2 11 11 C 1.53300 * 109.34256 * 180.32529 * 9 7 2 12 12 C 1.50049 * 109.12438 * 188.30316 * 11 9 7 13 13 S 1.70942 * 129.12205 * 199.57176 * 12 11 9 14 14 N 1.69660 * 95.92795 * 179.97438 * 13 12 11 15 15 C 1.29600 * 108.00648 * 0.02562 * 14 13 12 16 16 C 1.39234 * 117.17114 * 0.05669 * 15 14 13 17 17 C 1.48285 * 127.52077 * 179.78889 * 16 15 14 18 18 O 1.21324 * 122.29779 * 12.63081 * 17 16 15 19 19 C 1.51872 * 115.28402 * 192.78808 * 17 16 15 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.08997 * 109.52653 * 308.19715 * 11 9 7 22 22 H 1.08995 * 109.52400 * 68.33592 * 11 9 7 23 23 H 1.08007 * 121.41161 * 180.02562 * 15 14 13 24 24 H 1.08995 * 109.45078 * 195.87816 * 19 17 16 25 25 H 1.09002 * 109.74342 * 75.46604 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 1 3.8728 -0.6756 -0.8931 11 6 4.0191 -2.6407 -0.0203 12 6 5.5055 -2.6422 0.1850 13 16 6.6434 -3.8648 -0.1792 14 7 8.0012 -3.0103 0.3728 15 6 7.5994 -1.8581 0.8093 16 6 6.2348 -1.5913 0.7364 17 6 5.5308 -0.3603 1.1698 18 8 6.1230 0.6621 1.4457 19 6 4.0182 -0.4712 1.2473 20 1 -0.4850 0.8401 0.0040 21 1 3.5400 -3.2034 0.7809 22 1 3.7823 -3.0998 -0.9801 23 1 8.2935 -1.1358 1.2129 24 1 3.5829 0.5270 1.2937 25 1 3.7355 -1.0366 2.1354 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259530005.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = -4.304880 kcal Electronic energy + Delta-G solvation = -12931.506139 eV Core-core repulsion = 10615.459898 eV Total energy + Delta-G solvation = -2316.046241 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.82085 -37.48730 -35.85991 -32.54169 -30.27042 -28.70201 -25.70699 -23.83114 -21.61783 -20.74762 -17.86185 -17.73775 -16.92983 -15.82227 -15.01443 -14.66041 -14.24531 -13.94922 -13.66780 -13.49790 -12.89578 -12.54115 -12.13235 -11.65015 -11.24255 -10.87560 -10.71085 -10.38473 -10.14069 -10.00275 -9.46259 -9.13253 -8.94191 -8.74260 -8.68545 -6.27623 -4.30634 0.57312 1.47248 1.80388 1.90429 3.15657 3.18329 3.30064 3.33169 4.23847 4.42914 4.76625 5.00476 5.06712 5.44732 5.58635 5.72741 5.73671 5.92538 6.16869 6.21877 6.35609 6.59859 6.76050 7.07398 7.45296 7.87818 8.25129 8.73963 9.32521 10.84240 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.041689 B = 0.010188 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.480622 B = 2747.773980 C = 3302.402439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.029 3.971 10 H 0.037 0.963 11 C -0.043 4.043 12 C -0.103 4.103 13 S 0.277 5.723 14 N -0.484 5.484 15 C 0.140 3.860 16 C -0.272 4.272 17 C 0.428 3.572 18 O -0.469 6.469 19 C -0.166 4.166 20 H 0.268 0.732 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.185 0.815 24 H 0.081 0.919 25 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 -5.538 0.654 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.218 1.218 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.008 3.992 10 H 0.055 0.945 11 C -0.083 4.083 12 C -0.234 4.234 13 S 0.431 5.569 14 N -0.303 5.303 15 C -0.057 4.057 16 C -0.290 4.290 17 C 0.305 3.695 18 O -0.345 6.345 19 C -0.203 4.203 20 H 0.078 0.922 21 H 0.118 0.882 22 H 0.109 0.891 23 H 0.202 0.798 24 H 0.099 0.901 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.004 -6.785 0.134 12.928 hybrid contribution -0.281 2.596 0.663 2.694 sum 10.723 -4.189 0.797 11.540 Atomic orbital electron populations 1.69864 1.06228 1.27417 1.49038 1.24981 0.94715 0.98978 0.93908 0.87048 0.80146 0.83846 0.78626 1.19882 1.18885 1.21774 1.20857 0.87488 0.95024 1.52609 0.89918 1.19223 0.97648 0.89731 0.92584 0.94467 1.20408 0.83172 1.01278 1.03400 1.27222 1.03781 0.96936 0.95486 1.83736 0.93678 1.21843 1.57615 1.76610 1.21000 1.10172 1.22537 1.22616 0.94305 0.93941 0.94817 1.21784 0.93258 1.00460 1.13461 1.22902 0.92072 0.84036 0.70514 1.90481 1.72461 1.32095 1.39440 1.22937 0.89836 1.03893 1.03655 0.92208 0.88169 0.89070 0.79795 0.90122 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.96 55.43 0.77 -24.59 15 2 C 0.08 2.08 5.45 -17.82 -0.10 1.98 15 3 Si 0.87 20.90 24.40 -169.99 -4.15 16.76 15 4 H -0.27 -6.41 6.83 56.52 0.39 -6.03 15 5 H -0.26 -6.22 6.52 56.52 0.37 -5.85 15 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.52 -13.03 9.13 -34.44 -0.31 -13.34 15 8 H 0.08 2.18 7.98 -52.49 -0.42 1.76 15 9 C 0.03 0.60 1.67 -91.50 -0.15 0.45 15 10 H 0.04 0.82 7.18 -51.93 -0.37 0.44 15 11 C -0.04 -0.72 5.46 -28.04 -0.15 -0.87 15 12 C -0.10 -1.62 6.47 -34.23 -0.22 -1.84 15 13 S 0.28 3.76 23.67 -107.50 -2.54 1.22 15 14 N -0.48 -7.37 12.02 29.61 0.36 -7.02 15 15 C 0.14 2.13 11.20 -18.12 -0.20 1.93 15 16 C -0.27 -4.60 5.95 -105.00 -0.62 -5.22 15 17 C 0.43 8.31 7.09 -29.60 -0.21 8.10 15 18 O -0.47 -9.96 17.92 5.52 0.10 -9.86 15 19 C -0.17 -3.36 4.84 -27.18 -0.13 -3.49 15 20 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.10 1.55 8.13 -51.93 -0.42 1.13 15 22 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.19 2.43 8.06 -52.48 -0.42 2.01 15 24 H 0.08 1.80 3.20 -51.93 -0.17 1.64 15 25 H 0.10 1.90 8.14 -51.93 -0.42 1.48 15 LS Contribution 228.80 15.07 3.45 3.45 Total: -1.00 -28.56 228.80 -5.96 -34.51 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -1.83 Total: -2.16 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.11 Total: -12.30 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 1.13 Total: -31.61 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.10 Total: -9.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.15 Total: 16.76 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.54 Total: 1.22 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.56 -5.96 -34.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259530005.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.210 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds