Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.33737 * 300.00202 * 9 7 2 11 11 C 1.53300 * 109.34256 * 180.32529 * 9 7 2 12 12 C 1.50049 * 109.12438 * 188.30316 * 11 9 7 13 13 S 1.70942 * 129.12205 * 199.57176 * 12 11 9 14 14 N 1.69660 * 95.92795 * 179.97438 * 13 12 11 15 15 C 1.29600 * 108.00648 * 0.02562 * 14 13 12 16 16 C 1.39234 * 117.17114 * 0.05669 * 15 14 13 17 17 C 1.48285 * 127.52077 * 179.78889 * 16 15 14 18 18 O 1.21324 * 122.29779 * 12.63081 * 17 16 15 19 19 C 1.51872 * 115.28402 * 192.78808 * 17 16 15 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.08997 * 109.52653 * 308.19715 * 11 9 7 22 22 H 1.08995 * 109.52400 * 68.33592 * 11 9 7 23 23 H 1.08007 * 121.41161 * 180.02562 * 15 14 13 24 24 H 1.08995 * 109.45078 * 195.87816 * 19 17 16 25 25 H 1.09002 * 109.74342 * 75.46604 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 1 3.8728 -0.6756 -0.8931 11 6 4.0191 -2.6407 -0.0203 12 6 5.5055 -2.6422 0.1850 13 16 6.6434 -3.8648 -0.1792 14 7 8.0012 -3.0103 0.3728 15 6 7.5994 -1.8581 0.8093 16 6 6.2348 -1.5913 0.7364 17 6 5.5308 -0.3603 1.1698 18 8 6.1230 0.6621 1.4457 19 6 4.0182 -0.4712 1.2473 20 1 -0.4850 0.8401 0.0040 21 1 3.5400 -3.2034 0.7809 22 1 3.7823 -3.0998 -0.9801 23 1 8.2935 -1.1358 1.2129 24 1 3.5829 0.5270 1.2937 25 1 3.7355 -1.0366 2.1354 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259530005.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = -22.629092 kcal Electronic energy + Delta-G solvation = -12932.300736 eV Core-core repulsion = 10615.459898 eV Total energy + Delta-G solvation = -2316.840839 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.23196 -38.86328 -37.41444 -34.41597 -31.79599 -30.15485 -27.42297 -25.20227 -23.03105 -22.35848 -19.29124 -19.20793 -18.62923 -17.17037 -16.78955 -16.13678 -15.80128 -15.29202 -15.10469 -15.02083 -14.76956 -14.01608 -13.60675 -13.20687 -12.83233 -12.45146 -12.15824 -12.10711 -11.87608 -11.56168 -11.27221 -10.77828 -10.54825 -10.35585 -9.84052 -8.34453 -6.37691 -0.67908 0.28424 0.48741 0.75420 1.26321 1.35733 1.39448 1.79676 2.25384 2.95465 3.05806 3.51742 3.73741 3.94943 4.20189 4.30506 4.38484 4.61920 4.65096 4.75873 4.85648 5.21809 5.41972 5.45633 5.55704 6.22708 6.38224 6.71489 7.28301 8.80982 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.041689 B = 0.010188 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.480622 B = 2747.773980 C = 3302.402439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.295 1.295 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.028 3.972 10 H 0.027 0.973 11 C -0.037 4.037 12 C -0.110 4.110 13 S 0.354 5.646 14 N -0.500 5.500 15 C 0.144 3.856 16 C -0.288 4.288 17 C 0.433 3.567 18 O -0.493 6.493 19 C -0.168 4.168 20 H 0.267 0.733 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.200 0.800 24 H 0.059 0.941 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.608 -6.852 0.483 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.168 4.168 3 Si 0.749 3.251 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.222 1.222 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.007 3.993 10 H 0.046 0.954 11 C -0.076 4.076 12 C -0.241 4.241 13 S 0.508 5.492 14 N -0.320 5.320 15 C -0.052 4.052 16 C -0.307 4.307 17 C 0.311 3.689 18 O -0.372 6.372 19 C -0.206 4.206 20 H 0.077 0.923 21 H 0.131 0.869 22 H 0.126 0.874 23 H 0.217 0.783 24 H 0.077 0.923 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.853 -8.115 -0.040 15.200 hybrid contribution -0.829 2.843 0.683 3.039 sum 12.024 -5.272 0.643 13.145 Atomic orbital electron populations 1.69970 1.07637 1.27988 1.51847 1.25577 0.95093 1.01693 0.94428 0.86291 0.79114 0.81079 0.78622 1.19635 1.18473 1.22192 1.21166 0.89803 0.93817 1.50032 0.91849 1.19132 0.94926 0.92829 0.92412 0.95442 1.20267 0.83944 0.98420 1.04986 1.27152 1.03674 0.97975 0.95298 1.83550 0.91285 1.19154 1.55187 1.76538 1.22232 1.10341 1.22870 1.22681 0.93774 0.94232 0.94518 1.21578 0.94163 0.99753 1.15159 1.22797 0.91552 0.84637 0.69880 1.90471 1.72624 1.33197 1.40863 1.22858 0.91065 1.02736 1.03949 0.92310 0.86856 0.87411 0.78309 0.92319 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.96 21.45 0.30 -54.06 15 2 C 0.03 1.69 5.45 84.66 0.46 2.15 15 3 Si 0.92 43.51 24.40 68.60 1.67 45.19 15 4 H -0.27 -12.52 6.83 99.48 0.68 -11.84 15 5 H -0.26 -11.97 6.52 99.48 0.65 -11.32 15 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 15 7 C -0.51 -25.35 9.13 25.60 0.23 -25.11 15 8 H 0.06 3.35 7.98 -2.91 -0.02 3.32 15 9 C 0.03 1.11 1.67 -11.36 -0.02 1.09 15 10 H 0.03 1.17 7.18 -2.39 -0.02 1.15 15 11 C -0.04 -1.13 5.46 29.74 0.16 -0.97 15 12 C -0.11 -3.09 6.47 25.74 0.17 -2.92 15 13 S 0.35 8.17 23.67 -56.49 -1.34 6.83 15 14 N -0.50 -13.47 12.02 -60.25 -0.72 -14.19 15 15 C 0.14 3.97 11.20 85.26 0.95 4.92 15 16 C -0.29 -9.02 5.95 -20.11 -0.12 -9.14 15 17 C 0.43 16.16 7.09 28.74 0.20 16.37 15 18 O -0.49 -20.47 17.92 -3.17 -0.06 -20.53 15 19 C -0.17 -6.65 4.84 30.30 0.15 -6.50 15 20 H 0.27 14.77 8.31 -92.70 -0.77 14.00 15 21 H 0.11 3.18 8.13 -2.39 -0.02 3.16 15 22 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 23 H 0.20 4.73 8.06 -2.91 -0.02 4.71 15 24 H 0.06 2.58 3.20 -2.39 -0.01 2.57 15 25 H 0.12 4.21 8.14 -2.39 -0.02 4.19 15 Total: -1.00 -60.44 228.80 3.18 -57.26 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.13 Total: -0.38 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 2.19 Total: -20.12 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.42 Total: -68.25 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.19 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -1.34 Total: 6.83 kcal Total: -60.44 3.18 -57.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259530005.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -60.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds