Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 C 1.53002 * 109.46799 * 239.99798 * 2 1 3 5 5 C 1.50696 * 109.46997 * 120.00001 * 2 1 3 6 6 C 1.35322 * 126.12519 * 185.26181 * 5 2 1 7 7 C 1.39872 * 107.91889 * 180.14743 * 6 5 2 8 8 C 1.50697 * 125.89868 * 179.86972 * 7 6 5 9 9 C 1.52997 * 109.47466 * 124.71470 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 N 1.30835 * 108.19997 * 359.60090 * 7 6 5 19 19 N 1.34943 * 126.12839 * 4.97534 * 5 2 1 20 20 H 0.96997 * 126.03723 * 359.97438 * 19 5 2 21 21 H 1.08999 * 109.47046 * 300.00374 * 1 2 3 22 22 H 1.09001 * 109.47187 * 60.00132 * 1 2 3 23 23 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46874 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47288 * 299.99603 * 3 2 1 26 26 H 1.08992 * 109.47179 * 60.00163 * 3 2 1 27 27 H 1.08994 * 109.47326 * 300.00046 * 4 2 1 28 28 H 1.09004 * 109.47359 * 60.00579 * 4 2 1 29 29 H 1.09003 * 109.47362 * 180.02562 * 4 2 1 30 30 H 1.07996 * 126.03834 * 0.03317 * 6 5 2 31 31 H 1.09002 * 109.47120 * 4.71223 * 8 7 6 32 32 H 1.08998 * 109.46862 * 244.72025 * 8 7 6 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 3.3244 -0.8183 1.6178 7 6 3.3573 -1.5548 2.8064 8 6 4.5940 -1.9168 3.5877 9 6 4.4478 -1.4275 5.0299 10 6 5.6843 -1.7901 5.8112 11 1 6.4938 -2.3166 5.3275 12 6 5.7827 -1.4488 7.1435 13 7 4.7973 -0.8073 7.7325 14 14 7.3158 -1.8977 8.1118 15 1 8.3048 -0.7945 8.0123 16 1 6.9561 -2.1131 9.5364 17 1 7.9052 -3.1424 7.5566 18 7 2.1283 -1.8701 3.1259 19 7 1.2737 -1.3483 2.1462 20 1 0.3074 -1.4306 2.1293 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2492 28 1 1.6766 -0.2075 -2.1393 29 1 3.1299 -0.7218 -1.2491 30 1 4.1793 -0.4096 1.0996 31 1 5.4637 -1.4451 3.1303 32 1 4.7231 -2.9991 3.5825 33 1 3.5781 -1.8992 5.4872 34 1 4.3187 -0.3451 5.0349 35 1 4.8664 -0.5676 8.6698 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = 38.499698 kcal Electronic energy + Delta-G solvation = -14830.048895 eV Core-core repulsion = 12442.490780 eV Total energy + Delta-G solvation = -2387.558115 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98903 -36.79052 -33.90107 -31.98563 -29.65451 -28.88945 -27.40040 -27.30439 -25.16524 -22.33499 -21.24542 -19.28433 -18.54216 -17.05413 -16.14396 -14.79259 -14.59841 -14.36954 -13.97479 -13.73717 -13.20144 -12.80891 -12.77930 -12.40916 -12.38619 -12.07278 -11.87563 -11.27624 -11.18765 -11.01412 -10.94504 -10.86715 -10.53797 -10.17978 -9.85209 -9.37699 -9.02057 -8.55195 -8.24562 -8.15362 -5.90443 -3.93014 2.30943 3.27955 3.35704 3.38161 3.43989 3.47964 4.44180 4.53899 4.62379 4.75947 5.11108 5.33239 5.38214 5.44162 5.45156 5.55392 5.64168 5.71554 5.74189 5.86221 5.96555 6.09117 6.15600 6.18333 6.46033 6.65376 6.73124 7.01270 7.30084 7.69128 7.80476 7.95913 8.12431 8.30300 8.50604 9.14618 9.70141 11.20926 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.058643 B = 0.005053 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.350290 B = 5539.503182 C = 5614.707938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.003 4.003 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.087 3.913 6 C -0.266 4.266 7 C 0.100 3.900 8 C -0.039 4.039 9 C 0.030 3.970 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 N -0.289 5.289 19 N -0.485 5.485 20 H 0.429 0.571 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.015 0.985 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 2.565 -17.734 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.042 4.042 6 C -0.295 4.295 7 C -0.067 4.067 8 C -0.079 4.079 9 C -0.008 4.008 10 C -0.559 4.559 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 N -0.111 5.111 19 N -0.192 5.192 20 H 0.272 0.728 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.328 2.035 -16.709 18.780 hybrid contribution 0.737 0.233 0.084 0.778 sum -7.591 2.268 -16.625 18.416 Atomic orbital electron populations 1.21966 0.94300 1.02025 1.02718 1.19193 0.95254 0.95212 0.90847 1.21869 1.02007 0.93663 1.01923 1.21863 1.01942 1.00035 0.95517 1.20826 0.92027 0.98196 0.93176 1.21105 0.95819 1.11706 1.00911 1.22872 0.94370 0.95394 0.94062 1.20319 0.89435 1.00688 0.97437 1.19042 0.97388 0.96484 0.87873 1.21269 1.02648 1.36844 0.95112 0.92536 1.25017 0.96275 0.95292 0.97844 1.69988 1.31621 1.40211 1.11585 0.86601 0.83374 0.78808 0.79249 1.20717 1.21315 1.19845 1.77456 1.01023 1.22291 1.10356 1.46378 1.09016 1.44786 1.19036 0.72816 0.92215 0.91436 0.92494 0.91652 0.92128 0.92275 0.92571 0.92081 0.91722 0.84228 0.91351 0.91491 0.95790 0.96688 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.57 37.16 0.28 -1.00 16 2 C 0.00 -0.03 0.93 -155.66 -0.15 -0.18 16 3 C -0.14 -1.33 8.30 37.16 0.31 -1.02 16 4 C -0.14 -1.22 8.40 37.16 0.31 -0.91 16 5 C 0.09 1.26 5.60 -82.27 -0.46 0.80 16 6 C -0.27 -4.53 10.05 -40.01 -0.40 -4.94 16 7 C 0.10 2.06 6.49 -82.41 -0.53 1.53 16 8 C -0.04 -0.88 5.73 -27.89 -0.16 -1.04 16 9 C 0.03 0.82 4.93 -27.88 -0.14 0.69 16 10 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 14 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 N -0.29 -6.02 12.67 33.67 0.43 -5.59 16 19 N -0.49 -7.73 7.10 33.48 0.24 -7.49 16 20 H 0.43 5.41 7.98 -182.61 -1.46 3.95 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 24 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.14 2.10 8.04 -52.49 -0.42 1.68 16 31 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -33.27 293.89 -7.43 -40.71 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.89 Total: -1.97 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.35 Total: -20.01 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.40 Total: -40.26 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.27 -7.43 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.206 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds